Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02223 and BPUM_3571
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_02223___ykoC.1.24716.seq
# -bsequence dna-align/BPUM_3571___ykoC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02223___ykoC-BPUM_3571___ykoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02223___ykoC-BPUM_3571___ykoC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02223___ykoC
# 2: BPUM_3571___ykoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity: 453/890 (50.9%)
# Similarity: 453/890 (50.9%)
# Gaps: 280/890 (31.5%)
# Score: 920.5
#
#
#=======================================
BSNT_02223___ 1 ------ATGAAGCAGCCGTTACATCTCA---TTAATGCGACTGTGAAAGC 41
|..||.||..|.||.|.|..|| |.|||.|||||.|.|||
BPUM_3571___y 1 TTGCAAAGTAATCATTCCTTTCTTTCCACTGTGAATCCGACTATCAAA-- 48
BSNT_02223___ 42 GGCGGCGGTT--------------TTTTGTTGTGTCG--TCATG------ 69
|| ||..|.|||||.| |||||
BPUM_3571___y 49 --------TTACTCGCCCATCTGCTTGCGATGTGTTGTCTCATGGCGATA 90
BSNT_02223___ 70 -CTG-TCGTTTATTTACAACCCTTACACC--CCGGCATGTT-----TTTA 110
||| ||.|..| |||||| |.||.| |.||| |||| ||..
BPUM_3571___y 91 TCTGATCCTAAA---ACAACC--TTCATCATCTGGC-TGTTTGCACTTGG 134
BSNT_02223___ 111 TATCATCATCATCGCGGGC--GTTTTACTGGCGGCCGGAATCCCATTGAA 158
||| .||.| ||.||| |||||..||||| |||||
BPUM_3571___y 135 TAT-----------TGGACTTGTCTTA--GGCGGATGGAAT----TTGAA 167
BSNT_02223___ 159 AAAATGGT-TGTTGTTTACGA------TTCCGTTTTTGAT-TTTAGCATT 200
|| |.|| ||.||.| |.||.|.|.||.| |||..||||
BPUM_3571___y 168 ------GTATCTT-TTCACAAGACTTGTCCCTTATCTGCTCTTTTTCATT 210
BSNT_02223___ 201 CGGGTGCGTGTGGA------CAGCCGCAGTTTTTGGAAAGGTGCCGACAA 244
|..||| .|.|||| |.||| ||||||||||
BPUM_3571___y 211 CTCGTG-TTTTGGATGATGGCGGCC------TTTGGAAAGG--------- 244
BSNT_02223___ 245 CACCGGATAAT----TTT-----------TTGTTTCA--------AGCAG 271
.||||.|| ||| |.|||||| ||.||
BPUM_3571___y 245 ---GGGATCATACTGTTTGGAAATGGGCATGGTTTCATATGACAGAGGAG 291
BSNT_02223___ 272 GCCCTATCTCCA--TTAACAGCGATAATGTGTCTGTCGGCATCTCCCTCG 319
| ||||.| |||| |.| ||..||||.|.|||.
BPUM_3571___y 292 -----------AGTTTAAGA-----AATG-GAC--TCACCATCGCTCTCA 322
BSNT_02223___ 320 GGTTTCGTATTTTATGCTTTTCCGCCTTATCGA----TGATGTTTGTTTT 365
| .|||||| |.|||...|| ||.|.||| |.||
BPUM_3571___y 323 G-----------AATGCTT----GGCTTTGTGACATTTGGTCTTT-TGTT 356
BSNT_02223___ 366 T------ACAACCGATCCGATTTTATTTATGCTGAGCCTTGTCCAGCAGT 409
| |||||.|||..||....|||||||.|||||||..|.||.||.|
BPUM_3571___y 357 TACGTCCACAACAGATTTGACAGCATTTATGATGAGCCTCATTCATCAAT 406
BSNT_02223___ 410 GCAGGCTCTCACCAAAGCTCGCGTACGGTGTCATCGCAGGCTTTCGCTTT 459
|||...|.||.|||||....|||||.||..|..|.||||||||.||.|||
BPUM_3571___y 407 GCAAAATATCGCCAAAATGGGCGTATGGGATGCTTGCAGGCTTCCGGTTT 456
BSNT_02223___ 460 CTTCCGCTGTT--AAAGGATGAGGTCCAGCTGATTCA-GCAGGCTCATAA 506
.|||||.|.|| |||| |||..|..|||..||..| ||| ||.|||||
BPUM_3571___y 457 ATTCCGTTATTTCAAAG--TGAATTAAAGCAAATGAAGGCA-GCACATAA 503
BSNT_02223___ 507 AATCAGAGG--AGGAGCGGCGGAGAGCGGCATCATTAATAAAATCGGT-- 552
|||.||||| |..||| |.||||.|.||
BPUM_3571___y 504 AATTAGAGGCTATAAGC--------------------AAAAAAACAGTTG 533
BSNT_02223___ 553 ----GCGTTAAAACGATATACCATACCGCTATTGGTA---AGCGCCATCA 595
||.||.|.|||.|||.|..|.||.||.|| || || |.|.|..
BPUM_3571___y 534 GAAAGCCTTTATACGTTATGCTCTTCCTCTTTT--TACACAG-GGCGTAC 580
BSNT_02223___ 596 GAAAAGCGGAAC----GGACAGCGCTTGCGATGGAATCGAAAGGATTTAC 641
|||||.|.|||| ||.|| |||||||||||.|.|.|||.||.||
BPUM_3571___y 581 GAAAATCAGAACGTTTGGCCA----TTGCGATGGAAGCAAGAGGCTTCAC 626
BSNT_02223___ 642 AGG-AAGCAGAAACCGGACATACTA-CAGGACATTGAGCGTGAAC----C 685
.|| .|| ||..|||||||.||.|| ||.|.|| |.||| || .
BPUM_3571___y 627 GGGTGAG-AGGGACCGGACGTATTATCATGTCA-TCAGC----ACTTCAT 670
BSNT_02223___ 686 GGCGCGACTGGGTGT-TCTTTTGCCTCGTCCTC-TTATTATTCGCGGGA- 732
||..|||||...||| |||||||| ||.|| ||||.|.|..|..||
BPUM_3571___y 671 GGATCGACTATATGTATCTTTTGC----TCATCGTTATCAGTGTCTTGAC 716
BSNT_02223___ 733 -------TCCTTTCTCGTATCTTTATGTTTCGCATCATAA 765
|||||| ||| |||
BPUM_3571___y 717 ATGCATGTCCTTT--------------TTT-------TAA 735
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