Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
Amino acid alignment: BSNT_05929 and BPUM_3516

See DNA alignment / Visit BSNT_05929 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:29
# Commandline: needle
#    -asequence pep-align/BSNT_05929___cydD.1.24716.seq
#    -bsequence pep-align/BPUM_3516___cydD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05929___cydD-BPUM_3516___cydD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05929___cydD-BPUM_3516___cydD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05929___cydD
# 2: BPUM_3516___cydD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 580
# Identity:     334/580 (57.6%)
# Similarity:   446/580 (76.9%)
# Gaps:           8/580 ( 1.4%)
# Score: 1767.5
# 
#
#=======================================

BSNT_05929___      1 MKKEEWILPYIKQNARLFVLVIFLGGVTIFSAAFLMFTSGFLISKAATRP     50
                     |..:.|.:||||:|.:||.||:|||.:.:|||:.||:|||||||||||||
BPUM_3516___c      1 MVSKGWFIPYIKENQKLFALVLFLGAIAVFSASMLMYTSGFLISKAATRP     50

BSNT_05929___     51 ENILLIYVPIVAVRTFGIARSVSRYVERLVGHHIILKIVSDMRVRLYNML    100
                     ||||::||||||||||||:||.:||.|||..|.:||.::..||||||:|.
BPUM_3516___c     51 ENILMVYVPIVAVRTFGISRSAARYAERLASHQLILTMIEKMRVRLYDMA    100

BSNT_05929___    101 EPGALMLRSRFRTGDMLGILSEDIEHLQDAFLKTIFPAISALFLYAVSVI    150
                     |..|  .:::..||:|||:||:|:|.||||:||||||:|.||.|||.|:.
BPUM_3516___c    101 ERSA--KQTKLGTGEMLGLLSDDVERLQDAYLKTIFPSIGALLLYAASIG    148

BSNT_05929___    151 ALGFFSWPFAILLALYLFVLVVLFPVVSLLVTRAKNAKLKSGRNVLYSRL    200
                     |||.||||||.|:.:|:.:||.:||.|::||.||:..::|.|||.|||.|
BPUM_3516___c    149 ALGLFSWPFAGLMLIYMALLVFVFPYVTVLVNRARQTQMKKGRNELYSHL    198

BSNT_05929___    201 TDAVMGVSDWMFSGRRHAFIDAYEKEEHDWFELERKKQRFTRWRDFAAQC    250
                     ||||||||||:||||:..|:|.|||:|.....||..|.||.|.|.|.||.
BPUM_3516___c    199 TDAVMGVSDWLFSGRQKDFVDEYEKKEAQLLALEAAKHRFIRLRQFLAQL    248

BSNT_05929___    251 LVAGLILLMLFWTAGQQADGELAKTMIAAFVLVVFPLTEAFLPLSDALGE    300
                     ::.|.::|:::|:......|.::.|:|||||||:|||||||||||||.|:
BPUM_3516___c    249 IIGGAVVLVVYWSGSVVQSGSMSHTLIAAFVLVLFPLTEAFLPLSDAAGD    298

BSNT_05929___    301 VPGYQDSIRRMN---KVAPQLEASQTESGDQMLDLQDVTLAFRDVTFSYD    347
                     :|.||.::.|::   |::.:.| |:.::.||....|:..::|..|:|.||
BPUM_3516___c    299 IPVYQHAVSRLHHYEKLSYEGE-SERKTVDQSAVSQNKAVSFEQVSFGYD    347

BSNT_05929___    348 NSSQVLHNFSFTLRQGEKMALLGRSGSGKSTSLALIEGALKPDSGSVTLN    397
                     ....||...||:|:|||.:||||:||:||||.|.|:|||:.|:.|:|::.
BPUM_3516___c    348 LHQPVLKQLSFSLKQGESLALLGKSGAGKSTILKLLEGAVVPNQGAVSIQ    397

BSNT_05929___    398 GVETALLKDQIADAVAVLNQKPHLFDTSILNNIRLGNGEASDEDVRRAAK    447
                     |.....:::.::..|:||||:|:|||||:|||||||:..|::|.|:.||:
BPUM_3516___c    398 GKPVESIRENVSTYVSVLNQQPYLFDTSVLNNIRLGSPHATEEQVKEAAR    447

BSNT_05929___    448 QVKLHDYIESLPDGYHTSVQETGIRFSGGERQRIALARILLQDTPIIILD    497
                     ||:|||.|||||:||||.|||||||||||||||:||||||||:|||::||
BPUM_3516___c    448 QVQLHDTIESLPEGYHTGVQETGIRFSGGERQRMALARILLQNTPIVVLD    497

BSNT_05929___    498 EPTVGLDPITERELMETVFEVLKGKTILWITHHLAGVEAADKIVFLENGK    547
                     ||||||||.|||||:||:|.||||||::||||||.|.||.|:|:|:|.|:
BPUM_3516___c    498 EPTVGLDPRTERELLETIFRVLKGKTVIWITHHLTGCEACDRIMFIEGGQ    547

BSNT_05929___    548 TEMEGTHEELLAANERYSRLYHLDVPVK--    575
                     .||:|.|:|||..|.||.:||.:|.|..  
BPUM_3516___c    548 IEMQGEHQELLKENPRYQKLYEMDRPFSTI    577


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_05929 and BPUM_3516

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
