Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05929 and BPUM_3516
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_05929___cydD.1.24716.seq
# -bsequence dna-align/BPUM_3516___cydD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05929___cydD-BPUM_3516___cydD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05929___cydD-BPUM_3516___cydD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05929___cydD
# 2: BPUM_3516___cydD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1897
# Identity: 1116/1897 (58.8%)
# Similarity: 1116/1897 (58.8%)
# Gaps: 332/1897 (17.5%)
# Score: 2802.0
#
#
#=======================================
BSNT_05929___ 1 ATGAAGAAAG--AAGAATGGATTTTGCCGTATATCAAG------CAAAAT 42
||| |.||| |||..|||.||.|.||.||||||||| |||||
BPUM_3516___c 1 ATG--GTAAGTAAAGGCTGGTTTATACCTTATATCAAGGAGAATCAAAA- 47
BSNT_05929___ 43 GCCCGCCTGTTTGTTCTGGTTATCTTTTTGGGCGGGGTGACGATT----- 87
.|||||||..||||||.|.|||.|.|| |.|.|||
BPUM_3516___c 48 -----GCTGTTTGCGCTGGTTTTATTTCTAGG------GGCAATTGCAGT 86
BSNT_05929___ 88 -TTTTCTGCTGCTTTTCTCATGTTCACCTCAGGGTTTTTGATTTCTAAAG 136
||.||||||.||.|.||.||||..||.|||||.|||.|.|||||.||||
BPUM_3516___c 87 ATTCTCTGCTTCTATGCTGATGTATACGTCAGGATTTCTCATTTCAAAAG 136
BSNT_05929___ 137 CGGCGACAAGGCCGGAAAATATTCTGCTTATTTATGTGCCGATTGTCGCT 186
|.||.|||||.||.||.|||||.||..|..|.||.||.||.|||||.|||
BPUM_3516___c 137 CTGCCACAAGACCTGAGAATATACTTATGGTCTACGTCCCAATTGTAGCT 186
BSNT_05929___ 187 GTGCGCACCTTTGGGATTGCGCGCTCTGTTTCGCGATATGTGGAACGGCT 236
||.||.||||||||.|||.|.|||||.|.|.|.||.||||..||| .|.|
BPUM_3516___c 187 GTCCGTACCTTTGGTATTTCACGCTCAGCTGCCCGTTATGCAGAA-AGAT 235
BSNT_05929___ 237 CGTCG-GGCATCACATCATTTTGA---------AAATCGTATCCGACATG 276
.|.|| |.||.||..||||||||| ||| |.|||
BPUM_3516___c 236 TGGCGAGCCACCAGCTCATTTTGACCATGATTGAAA---------AAATG 276
BSNT_05929___ 277 CGCGTCCGCCTTTACAATATGCTTGAGCCGGGTGCTTTG---------AT 317
||.||||||||.||..|.|||..|||.|...|||| | |.
BPUM_3516___c 277 CGTGTCCGCCTATATGACATGGCTGAACGAAGTGC---GAAACAGACAAA 323
BSNT_05929___ 318 GCTGCGTTCCCGTTTTCGCACGGGGGATATGCTCGGCATTTTGTCTGAGG 367
|||..|| ||.||.||.|||||.||..|.|||||.||.|
BPUM_3516___c 324 GCTAGGT------------ACAGGTGAAATGCTAGGGCTCTTGTCAGATG 361
BSNT_05929___ 368 ATATTGAGCATTTGCAGGATGCTTTCTTAAAAACGATTTTTCCTGCGATC 417
||.|||||....|.|||||.||.|..||||||||.||.|||||..|.|||
BPUM_3516___c 362 ATGTTGAGAGACTACAGGACGCCTATTTAAAAACCATCTTTCCATCCATC 411
BSNT_05929___ 418 TCAGCCTTGTTCCTGTATGCTGTGT-CAGTGATAGCGCTTGGCTTCTTCT 466
...||..||.|..|.||.||.|..| ||.|| ..||.|||||..|.||||
BPUM_3516___c 412 GGTGCACTGCTTTTATACGCAGCATCCATTG-GGGCACTTGGTCTATTCT 460
BSNT_05929___ 467 CTTGGCCGTTTGC---CATATTGCTTGCGCTTTATTTGTTTGTTCTTGTT 513
|.|||||.||||| |.||.|||| |.|||||.|| |..|||.||
BPUM_3516___c 461 CGTGGCCTTTTGCTGGCTTAATGCT---GATTTATATG---GCACTTCTT 504
BSNT_05929___ 514 GTA-TTGTTT--CCGGTTGTGTCTTTGCTCGTGA--CGAGAGCGAAGAAT 558
||| |||||| ||....||..|..||||.|||| ||.|.|.||..||.
BPUM_3516___c 505 GTATTTGTTTTCCCATACGTCACAGTGCTAGTGAACCGGGCGAGACAAAC 554
BSNT_05929___ 559 GCGAAGCTGAAAAGCGGGCGGAATGTGCTGTACAGCCGTCTGACAGATGC 608
.|.|| ||||||..||..|.||||..|||||.||||.|.|.||||||||
BPUM_3516___c 555 TCAAA--TGAAAAAAGGCAGAAATGAACTGTATAGCCATTTAACAGATGC 602
BSNT_05929___ 609 TGTGATGGGTGTCAGCGACTGGATGTTCAGCGGACGCCGGCATGCTTTTA 658
.||.|||||.||.||.||.|||.||||.|||||..|.|.|.|.|.||||.
BPUM_3516___c 603 CGTCATGGGCGTGAGTGATTGGCTGTTTAGCGGTAGGCAGAAAGATTTTG 652
BSNT_05929___ 659 TTGATGCTTATGAA---AAAGAGGAACATGATTGGTTTGAGCTTGAACGG 705
|.||||..|||||| |||||.|..|| |.| |||.|.||||||| |
BPUM_3516___c 653 TGGATGAATATGAAAAGAAAGAAGCGCA-GCT--GTTAGCGCTTGAA--G 697
BSNT_05929___ 706 AA--AAAACAACGCTTTA-----CAAGATG-GCGGGATTTTGCTGCGCAA 747
.| .||.||.||.|||| | || ||..|.||||| ||.||
BPUM_3516___c 698 CAGCCAAGCACCGATTTATCCGTC----TGCGCCAGTTTTTG--GCACA- 740
BSNT_05929___ 748 TGCCTTGTC---GCCGGCCTTATTTTGCTGATGCTGTTTTGGACGGCGGG 794
.|||.|| |..||...|.||.||||..|..|||.||||| ||||
BPUM_3516___c 741 --GCTTATCATTGGAGGAGCTGTTGTGCTTGTCGTGTATTGGA--GCGG- 785
BSNT_05929___ 795 ACAGCAAGCGGACGGCGAGCTC--GCTAAAACGATG------------AT 830
..|.|.||.|.|| || ||| ||||| ||
BPUM_3516___c 786 ------TTCCGTCGTCCAG-TCAGGCT----CGATGTCACACACCCTAAT 824
BSNT_05929___ 831 TGCCGCTTTTGTGCTAGTGGTGTTTCCGTTGACGGAAGCCTTTTTGCCGC 880
|||.||.||.|||||.|||.|.||||||||.||.||.||||||.|.||.|
BPUM_3516___c 825 TGCAGCCTTCGTGCTTGTGCTTTTTCCGTTAACAGAGGCCTTTCTTCCAC 874
BSNT_05929___ 881 TTTCGGATGCCTTAGGCGAAGTGCCGGGCTATCAGGATTCTATCAGACG- 929
||||.|||||...|||.||..|.||||.|||||||.||.||.||||..|
BPUM_3516___c 875 TTTCAGATGCAGCAGGTGATATTCCGGTCTATCAGCATGCTGTCAGCAGA 924
BSNT_05929___ 930 ---------CATGAACAAGGTGGCTCCTCAGCTGGAGGCGTCACAAACTG 970
.|||||.| ||| .||...||.||| |.||.|||
BPUM_3516___c 925 TTACATCATTATGAAAA-----GCT-TTCGTATGAAGG----AGAATCTG 964
BSNT_05929___ 971 A-------ATCAGGGGATCAAAT--GCTCGATCT-----TCAAGATGTCA 1006
| | |||..|| |.|.| |||...||| |.|||.|||
BPUM_3516___c 965 AGCGCAAGA-CAGTTGA-CCAGTCGGCTGTTTCTCAAAATAAAGCTGT-- 1010
BSNT_05929___ 1007 CCTTGGCCTTTCGTG---ATGTGACGTTTTCTTATGA----CAACAGCAG 1049
|| |||| || |.|||.|.|||...||||| ||
BPUM_3516___c 1011 --TT---CTTT--TGAACAAGTGTCCTTTGGGTATGATTTGCA------- 1046
BSNT_05929___ 1050 CCAA---GTGCTGCA-CAACTTTTCCTTTACGCTGCGCCAAGGAGAAAAA 1095
|||| |||||..| |||| |.||.|||.|.||....|||||.|||..|
BPUM_3516___c 1047 CCAACCCGTGCTAAAGCAAC-TCTCATTTTCACTAAAGCAAGGGGAATCA 1095
BSNT_05929___ 1096 ATGGCGCTGCTCGGCCGAAGCGGCTCTGGGAAATCAAC-ATCGCTTG-CA 1143
.|.||.||..|.||...||||||..|.||.|||||.|| || .||| .|
BPUM_3516___c 1096 CTTGCTCTCTTAGGGAAAAGCGGTGCAGGAAAATCGACTAT--TTTGAAA 1143
BSNT_05929___ 1144 TTAATCGAAGGCGC---CTTG--AAACC--GGACTCCGGTTCTGTGA-CG 1185
||..|.|||||.|| |.|| |||.| ||| .||||.| |.
BPUM_3516___c 1144 TTGTTAGAAGGAGCTGTCGTGCCAAATCAAGGA-------GCTGTCAGCA 1186
BSNT_05929___ 1186 TTAAACGGAGTGGAGACAG--CGCTGTTAAAGGATCAGATTGCGGATGCG 1233
|| .||.|||.||.| || ||||.||..|| |.|.|.|.|
BPUM_3516___c 1187 TT-----CAGGGGAAACCGGTCG-----AAAGCATTCGA--GAGAACGTG 1224
BSNT_05929___ 1234 ---------GTGGCCGTGTTAAATCAAAAACCGCACCTGTTTGATACAAG 1274
|||.|.|||.|.|||||..|.|||.|..|.||.|||||...
BPUM_3516___c 1225 TCTACCTATGTGTCAGTGCTCAATCAGCAGCCGTATTTATTCGATACCTC 1274
BSNT_05929___ 1275 TATTTTGAACAACA-----TCAGGCTC---------------GGAA-ACG 1303
|.||||.|||||.| |.|||||| |||| |.|
BPUM_3516___c 1275 TGTTTTAAACAATATTCGCTTAGGCTCTCCTCATGCGACAGAGGAACAAG 1324
BSNT_05929___ 1304 GAGAAGCAAGCGACGAG-GATGTGCGCCGCGCCGCAAAGCAGGTCAAGCT 1352
.|.||| ||||..|||| .|.|||| ||||
BPUM_3516___c 1325 TAAAAG-AAGCAGCGAGACAAGTGC---------------------AGCT 1352
BSNT_05929___ 1353 GCATGACTA-CATTGAGTCATTGCCTGATGGATATCATACCTCTGTACAA 1401
|||.|| || |||.||.||.|||||.||.||.|||||.|||..|||.||.
BPUM_3516___c 1353 GCACGA-TACCATCGAATCTTTGCCAGAGGGTTATCACACCGGTGTGCAG 1401
BSNT_05929___ 1402 GAAACCGGCATCCGTTTTTCCGGTGGAGAGCGCCAGCGGATCGCGCTTGC 1451
||.||.||.||.|||||.||.||.|||||..|.||.|||||.|||.|.||
BPUM_3516___c 1402 GAGACAGGGATTCGTTTCTCAGGGGGAGAAAGACAACGGATGGCGTTAGC 1451
BSNT_05929___ 1452 GAGGATTTTGCTGCAGGATACACCGATCATCATCCTCGATGAGCCAACAG 1501
..|.|||||||||||..|.||.|||||..|..|..|.||||||||.||.|
BPUM_3516___c 1452 CCGTATTTTGCTGCAAAACACCCCGATTGTTGTATTAGATGAGCCCACCG 1501
BSNT_05929___ 1502 TCGGCCTCGATCCTATTACCGAACGTGAATTGATGGAAACGGTGTTTGAG 1551
|.||.||.||.||...|||.||.|||||.|||.|.|||||..| |||..|
BPUM_3516___c 1502 TTGGACTTGACCCACGTACAGAGCGTGAGTTGCTTGAAACCAT-TTTCCG 1550
BSNT_05929___ 1552 -GTGCTGAAAGGAAAAACGATTTTATGGATTACCCACCATCTCGCGGGAG 1600
|||.|.||||||||||||.|..|.|||||||||||.||||||.|.|| .
BPUM_3516___c 1551 TGTGTTAAAAGGAAAAACGGTCATTTGGATTACCCATCATCTCACTGG-C 1599
BSNT_05929___ 1601 TG-GAAGCGGCTGATAAAATCGTATTTCTCGAAAACGGCAAAACAGAAAT 1649
|| ||.||...|||....||..|.|||.|.|||...||..|||..||.||
BPUM_3516___c 1600 TGTGAGGCATGTGACCGCATTATGTTTATTGAAGGTGGTCAAATTGAGAT 1649
BSNT_05929___ 1650 GGAAGGAACCCATGAGGAGCTTCTGGCGGCAAACGAACGGTACAGCCGC- 1698
|.|.||....|||.||||.||.|||...|.|||| ||||
BPUM_3516___c 1650 GCAGGGGGAGCATCAGGAACTACTGAAAGAAAAC-----------CCGCG 1688
BSNT_05929___ 1699 ----------CTGTATCACCTTGAT-----GTTCCTGTAAAATAG-- 1728
.|||||.|..|.||| ||| .|.||.||||.
BPUM_3516___c 1689 CTATCAAAAATTGTATGAGATGGATCGGCCGTT-TTCTACAATATAA 1734
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