Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05904 and BPUM_3506

See DNA alignment / Visit BSNT_05904 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence pep-align/BSNT_05904.1.24716.seq
#    -bsequence pep-align/BPUM_3506___licB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05904-BPUM_3506___licB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05904-BPUM_3506___licB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05904
# 2: BPUM_3506___licB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 104
# Identity:      70/104 (67.3%)
# Similarity:    75/104 (72.1%)
# Gaps:          24/104 (23.1%)
# Score: 364.5
# 
#
#=======================================

BSNT_05904         1 -------------------MEKSAQEQGKDYTIWAVSGDSVQNHIDKADV     31
                                        ||||||||||||.||||||||.:||||:|||
BPUM_3506___l      1 MNILLVCAAGMSTSLLVTKMEKSAQEQGKDYRIWAVSGDSAKNHIDQADV     50

BSNT_05904        32 LLLGPQVRYMLPQLKKLGESKGVPVDVINTVHYGTCNGAEVLKSAEQL--     79
                     |||||||||:|||:|||||.|.:|||||||||||.|||||||||||||  
BPUM_3506___l     51 LLLGPQVRYLLPQMKKLGEEKSIPVDVINTVHYGVCNGAEVLKSAEQLVN    100

BSNT_05904        80 GHVS     83
                     |   
BPUM_3506___l    101 G---    101


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.