Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05904 and BPUM_3506

See Amino acid alignment / Visit BSNT_05904 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_05904.1.24716.seq
#    -bsequence dna-align/BPUM_3506___licB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05904-BPUM_3506___licB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05904-BPUM_3506___licB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05904
# 2: BPUM_3506___licB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 319
# Identity:     179/319 (56.1%)
# Similarity:   179/319 (56.1%)
# Gaps:          80/319 (25.1%)
# Score: 610.5
# 
#
#=======================================

BSNT_05904         0 --------------------------------------------------      0
                                                                       
BPUM_3506___l      1 ATGAACATCTTATTGGTATGTGCAGCAGGTATGTCTACAAGCTTACTAGT     50

BSNT_05904         1 -------ATGGAAAAAAGTGCGCAGGAACAGGGAAAAGACTATACCATTT     43
                            |||||.|||||.|||||.|||||.||||||||||||...||||
BPUM_3506___l     51 TACAAAAATGGAGAAAAGCGCGCAAGAACAAGGAAAAGACTATCGTATTT    100

BSNT_05904        44 GGGCAGTTTCAGGCGATTCTGTACAAAATCATATCGATAAAGCGGATGTA     93
                     |||||||.||.||.|||||.|.|.||||||||||.|||.||||.||||  
BPUM_3506___l    101 GGGCAGTATCCGGAGATTCAGCAAAAAATCATATTGATCAAGCCGATG--    148

BSNT_05904        94 TTGCTT---CTCGGTCCGCAAGTCCGTTACATGCTTCCGCAGCTCAAAAA    140
                      |||||   .|.||.||.||.||.||.||..|..|.||.||..|.|||||
BPUM_3506___l    149 -TGCTTTTATTAGGACCACAGGTTCGATATTTATTACCACAAATGAAAAA    197

BSNT_05904       141 ATTAGGAGAGTCAAAGGGGGTTCCGGTAGATGTCATTAATACCGTCCATT    190
                     ..|||||||...|||..|..||||.||.||.|||||.||||||||.||||
BPUM_3506___l    198 GCTAGGAGAAGAAAAAAGTATTCCAGTCGACGTCATCAATACCGTGCATT    247

BSNT_05904       191 ATGGCACGTGCAACGGGGCGGAAGTGCTGAAATCAGCTGAACAGCT--TG    238
                     |.|||...||.||.|||||.||.||..|.|||||.|||||||||.|  ||
BPUM_3506___l    248 ACGGCGTATGTAATGGGGCTGAGGTTTTAAAATCTGCTGAACAGTTAGTG    297

BSNT_05904       239 GAC-----ATGTGTCATAG    252
                     .||     |          
BPUM_3506___l    298 AACGGATAA----------    306


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