Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05829 and BPUM_3459
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence pep-align/BSNT_05829___rodA.1.24716.seq
# -bsequence pep-align/BPUM_3459___rodA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05829___rodA-BPUM_3459___rodA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05829___rodA-BPUM_3459___rodA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05829___rodA
# 2: BPUM_3459___rodA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 406
# Identity: 280/406 (69.0%)
# Similarity: 335/406 (82.5%)
# Gaps: 16/406 ( 3.9%)
# Score: 1449.5
#
#
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BSNT_05829___ 1 MSRYKKQQSPFYQGDLIFIFGVFFIISVVSIYAAGQFGQYGNTDWIQQIV 50
..|:..||:|||||||||..||.|||::|||||||||||:..|.:||:
BPUM_3459___r 1 --MNKRNTSPYYQGDLIFIFLAFFAISVIAIYAAGQFGQYGSNAWTRQII 48
BSNT_05829___ 51 FYFLGAVAITVLLYFDLEQLEKLSLYIFIIGILSLIILKISPESI----- 95
:|.:|.:.|..:.||||||||||||||||.|||.|:.||::|..|
BPUM_3459___r 49 YYMVGVICIVAINYFDLEQLEKLSLYIFIGGILLLLFLKVAPAKIGSHDF 98
BSNT_05829___ 96 APVIKGAKSWFRI-GRITIQPSEFMKVGLIMMLASVIGKANPKGVRTLRD 144
||:..||||||.| |..|:|||||||:||||||||||||::|:|.|||.|
BPUM_3459___r 99 APIKNGAKSWFVIPGVGTLQPSEFMKIGLIMMLASVIGKSSPRGKRTLED 148
BSNT_05829___ 145 DIHLLLKIAGVAVIPVGLILMQDAGTAGICMFIVLVMVFMSGINWKLIAI 194
||.||||||||:.:|||||.:||||||.:|||||:||||:||:|||||::
BPUM_3459___r 149 DIFLLLKIAGVSAVPVGLIFLQDAGTAAVCMFIVVVMVFLSGVNWKLISL 198
BSNT_05829___ 195 IAGSGILLISLILLVMINFPDVAKSVGIQDYQIKRVTSWVSASN------ 238
|....:||::.:|.|:|.||||||::|||.|||.|:|:|:..|:
BPUM_3459___r 199 IGSVVVLLVAAVLAVIILFPDVAKTIGIQQYQINRITAWLPDSSTSANQA 248
BSNT_05829___ 239 ETQEDS-NDSWQVDQAIMAIGSGGILGNGISNLKVYVPESTTDFIFSIIG 287
:||:.| :|.:||||||||||:|.|.|||:.||||||||:.||.||||||
BPUM_3459___r 249 QTQDSSGSDKYQVDQAIMAIGAGQIFGNGVKNLKVYVPEAQTDMIFSIIG 298
BSNT_05829___ 288 ESFGFIGCAVVVIMFFFLIYRLVVLIDKIHPFNRFASFFCVGYTALIVIH 337
|:|||||||.|||||||||||||||||:|||::|||||||||||||||||
BPUM_3459___r 299 EAFGFIGCAFVVIMFFFLIYRLVVLIDRIHPYSRFASFFCVGYTALIVIH 348
BSNT_05829___ 338 TFQNIGMNIGIMPVTGIPLLFVSYGGSSTLSTLIGFGIVYNASVQLTKYR 387
||||||||||:||||||||||:|:||||.||.||||||.||||||||||:
BPUM_3459___r 349 TFQNIGMNIGVMPVTGIPLLFISFGGSSVLSVLIGFGIAYNASVQLTKYQ 398
BSNT_05829___ 388 SYLFNS 393
||||.
BPUM_3459___r 399 SYLFK- 403
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