Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05829 and BPUM_3459
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_05829___rodA.1.24716.seq
# -bsequence dna-align/BPUM_3459___rodA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05829___rodA-BPUM_3459___rodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05829___rodA-BPUM_3459___rodA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05829___rodA
# 2: BPUM_3459___rodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1295
# Identity: 837/1295 (64.6%)
# Similarity: 837/1295 (64.6%)
# Gaps: 196/1295 (15.1%)
# Score: 2649.5
#
#
#=======================================
BSNT_05829___ 1 ATGAGTCGATATAAG----AAACAGCAAAGCCCCTTTTACCAGGGGGATT 46
|||| |.||| |.|||.| .||.|..||.||.|||||||
BPUM_3459___r 1 ATGA------ACAAGAGGAATACATC----TCCATACTATCAAGGGGATT 40
BSNT_05829___ 47 TGATTTTTATATTTGGTGTGTTTTTTATTATAAGCGTAGTATCA-----A 91
|.||||||||||||...|..||.|||...|| ||||.||| |
BPUM_3459___r 41 TAATTTTTATATTTTTAGCCTTCTTTGCCAT-----TAGTGTCATTGCGA 85
BSNT_05829___ 92 TTTATGCTGCCGGTCAGTTTGGGCAGTATGGGAAC----------ACG-- 129
||||||||||.|||||.|||||||||||| |||.| |||
BPUM_3459___r 86 TTTATGCTGCGGGTCAATTTGGGCAGTAT-GGATCTAATGCATGGACGAG 134
BSNT_05829___ 130 ---GATTGGATTCAGCAAATTGT----GTTTTATTTTTTGGGGGCTGTTG 172
|||| |||.|..|.||.|| |||.|||.|.| |||.|
BPUM_3459___r 135 GCAGATT--ATTTACTACATGGTCGGCGTTATATGTAT-------TGTAG 175
BSNT_05829___ 173 CCATTACAGTTCTTTTGTACTTTGATTTAGAACAGCTTGAAAAGTTAAGT 222
|.||.| ..|||||||||||.||.||..|.||.|||.|||||
BPUM_3459___r 176 CGATAA---------ATTACTTTGATTTGGAGCAATTAGAGAAGCTAAGT 216
BSNT_05829___ 223 TTATATATTTTTATCATTGGTAT-------TTTATCTT--TGA---TTAT 260
.|.|||||||||||...|||||| ||..|||| ||| ||..
BPUM_3459___r 217 CTCTATATTTTTATAGGTGGTATACTGCTGTTACTCTTTCTGAAAGTTGC 266
BSNT_05829___ 261 TCTT---AAAAT---CAGTCCCGAGTCTATTGCACCTGTTATTAAAGGGG 304
||.| ||||| .||.|..|| |.||||.||..|||..||.||.|
BPUM_3459___r 267 TCCTGCAAAAATTGGAAGCCATGA---TTTTGCCCCAATTAAAAATGGTG 313
BSNT_05829___ 305 CAAAAAGTTGGTTT--------AGGA-TCGGTAGAATAACAATACAGCCG 345
|||||||.|||||| |||| |.|| ||||.|.|||||.
BPUM_3459___r 314 CAAAAAGCTGGTTTGTAATACCAGGAGTTGG------AACACTTCAGCCT 357
BSNT_05829___ 346 TCAGAGTTTATGAAGGTTGGTTTGATTATGATGCTTGCTTCAGTTATTGG 395
||||||||||||||..||||||||||||||||||||||.||.||.||.||
BPUM_3459___r 358 TCAGAGTTTATGAAAATTGGTTTGATTATGATGCTTGCATCTGTCATCGG 407
BSNT_05829___ 396 AAAAGCAAATCCTAAAGGAGTTCGGACGCTTAG-GGATGATATCCACTTG 444
.||..|||..||||.||||...||||| .|||| ||||||||||..|.|.
BPUM_3459___r 408 TAAGTCAAGCCCTAGAGGAAAACGGAC-ATTAGAGGATGATATCTTCCTA 456
BSNT_05829___ 445 TTATTAAAGATTGCGGGTGTCGCAGTTATTCCTGTAGGTCTTATCTTGAT 494
.|||||||.|||||.||.||..|||...||||.||.||.||.||.||..|
BPUM_3459___r 457 CTATTAAAAATTGCCGGGGTATCAGCCGTTCCAGTTGGGCTAATTTTCTT 506
BSNT_05829___ 495 GCAGGATGCTGGGACTGCGGGAATATGTATGTTTATCGTTCTTGTAATGG 544
.||||||||.||.||.||.|...|.|||||||||||.||..||||.||||
BPUM_3459___r 507 ACAGGATGCAGGTACAGCAGCTGTTTGTATGTTTATTGTCGTTGTGATGG 556
BSNT_05829___ 545 TTTTTATGTCAGGGATAAACTGGAAATTGATTGCGATCATAG-----CTG 589
|.|||.|.||||||.|.||.|||||..|||||.|..||||.| .||
BPUM_3459___r 557 TGTTTTTATCAGGGGTCAATTGGAAGCTGATTTCTCTCATCGGTTCTGTG 606
BSNT_05829___ 590 GTTCAGGTATCTTACTCATTTCATTAATT---------TTATTAGTAATG 630
|||..| ||| |||.|| |||...||.||.
BPUM_3459___r 607 GTTGTG----CTT----------TTAGTTGCCGCTGTGTTAGCCGTGATC 642
BSNT_05829___ 631 ATAAACTTTCCTGACGTTGCTAAATCAGTTGGAATACAGGATTATCAAAT 680
||...|||.|||||.|||||.|||.||.||||.||.|||.|.||.||.||
BPUM_3459___r 643 ATTCTCTTCCCTGATGTTGCGAAAACAATTGGTATTCAGCAGTACCAGAT 692
BSNT_05829___ 681 TAAGCGCGTCACTTCTTGGGTG---------TCTGCTTCA-------AAT 714
|||.||..|.||..|||||.|| |||.|.||| ||
BPUM_3459___r 693 TAACCGGATTACGGCTTGGCTGCCTGATAGCTCTACATCAGCCAACCAA- 741
BSNT_05829___ 715 G---AGACACAGGAAGATTCAAATGACAG-CTGG-------------CAA 747
| ||||.||| ||||| | |||| |||
BPUM_3459___r 742 GCGCAGACTCAG---GATTC--------GTCTGGGTCTGATAAATATCAA 780
BSNT_05829___ 748 GTTGACCAGGCCATCATGGCAATAGGATCTGGTGGTATTTTAGGTAATGG 797
||.|||||||||||.|||||.||.||..||||....|||||.||.|||||
BPUM_3459___r 781 GTAGACCAGGCCATTATGGCTATTGGGGCTGGACAGATTTTTGGGAATGG 830
BSNT_05829___ 798 TATTTCTAATTTGAAGGTTTATGTTCCAGAGAGTAC-GACTGACTTTATC 846
..||...||.||.||.||.|||||.|||||| |.|| .||.||..|.||.
BPUM_3459___r 831 GGTTAAAAACTTAAAAGTCTATGTCCCAGAG-GCACAAACAGATATGATT 879
BSNT_05829___ 847 TTTTCTATAATAGGTGAGTCATTTGGCTTTATAGGCTGTGCAGTTGTTGT 896
||.||.||.|||||.||..|.|||||.|||||.||||||||..|||||||
BPUM_3459___r 880 TTCTCCATTATAGGAGAAGCCTTTGGTTTTATTGGCTGTGCGTTTGTTGT 929
BSNT_05829___ 897 CATCATGTTCTTCTTTTTAATCTACAGGCTTGTCGTTCTGATAGACAAAA 946
.||||||||||||||.||.||||||.||||||||||.|||||.|||...|
BPUM_3459___r 930 GATCATGTTCTTCTTCTTGATCTACCGGCTTGTCGTGCTGATTGACCGTA 979
BSNT_05829___ 947 TACATCCGTTTAACCGTTTCGCTTCTTTCTTTTGCGTTGGCTATACGGCG 996
|.|||||.|.||.|||.||.||.||.|||||.||.||.||.|||||.||.
BPUM_3459___r 980 TCCATCCTTATAGCCGATTTGCGTCATTCTTCTGTGTAGGATATACAGCA 1029
BSNT_05829___ 997 TTAATTGTGATCCACACATTCCAGAATATCGGAATGAACATCGGCATTAT 1046
.|.|||||.|||||.||.||||||||.||.||.||||||||||||.|.||
BPUM_3459___r 1030 CTTATTGTAATCCATACGTTCCAGAACATTGGGATGAACATCGGCGTAAT 1079
BSNT_05829___ 1047 GCCTGTTACCGGGATTCCGCTGCTGTTTGTCAGCTATGGGGGAAGCTCGA 1096
||||||.||.|||||||||||.||.|||.||||||..||.|||||.|
BPUM_3459___r 1080 GCCTGTAACAGGGATTCCGCTCCTATTTATCAGCTTCGGAGGAAGTT--- 1126
BSNT_05829___ 1097 CACTTTCCACGTTA---------ATCGGATTTGGGATTGTATATAATGCA 1137
||.|| ||| ||.|||||.||.||||..|||||.|||
BPUM_3459___r 1127 --CTGTC----TTATCTGTTCTCATTGGATTCGGAATTGCTTATAACGCA 1170
BSNT_05829___ 1138 AGTGTGCAGCTGACGAAATACAGAAGTTATCTTTTTAATTCTTAA 1182
|||||.||..|.|||||||||..|||||||.|.||||| .|||
BPUM_3459___r 1171 AGTGTTCAATTAACGAAATACCAAAGTTATTTATTTAA---ATAA 1212
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