Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03950 and BPUM_3317
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence pep-align/BSNT_03950___yrhE.1.24716.seq
# -bsequence pep-align/BPUM_3317.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03950___yrhE-BPUM_3317.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03950___yrhE-BPUM_3317.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03950___yrhE
# 2: BPUM_3317
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1112
# Identity: 204/1112 (18.3%)
# Similarity: 333/1112 (29.9%)
# Gaps: 460/1112 (41.4%)
# Score: 482.0
#
#
#=======================================
BSNT_03950___ 1 MNMMDGKSISVRVDGTEIQARAGATILDILNENGIEYPQICHVPEVDPIQ 50
BPUM_3317 0 -------------------------------------------------- 0
BSNT_03950___ 51 TCDTCIVEANGKLVRSCATVAENGMSIDLSGNRVKEAQTEAMDRLLENHL 100
BPUM_3317 0 -------------------------------------------------- 0
BSNT_03950___ 101 LYCTVCDNNNGNCTLHNTAEMMGIEHQKYPYTPKEDPSCAVDMSHPFYRY 150
BPUM_3317 0 -------------------------------------------------- 0
BSNT_03950___ 151 DPNQCIACGQCVEVCQNLQVNETLSIDWERERPRVIWDEGVPINESSCVS 200
BPUM_3317 0 -------------------------------------------------- 0
BSNT_03950___ 201 CGQCVTVCPCNALMEKSMLGQAGFMTGIKEDVMEPMIDLVKNVEP-GYGS 249
:|:......||.: .:|...|..:..| |.|.
BPUM_3317 1 ------------------MGKTKHKGPIKLN-KKPSPKLWASFAPMGLGK 31
BSNT_03950___ 250 IFAISEVEAAMRETRTKK----------TKTVCTFCGVGCSF-------- 281
: ....:...|:.....| |:.||..|.:|.|.
BPUM_3317 32 V-KPKHIRDTMKVAWENKDNLPYAYRILTQGVCDGCALGVSGLYDQTLAG 80
BSNT_03950___ 282 -EVWTKGRDILKI--QPVSD-------APVNAISTCVKGKFGWDFVNSEE 321
.:.|...::|:: .|..| ..:..:.:....|.|
BPUM_3317 81 PHICTTRLNVLRLNTMPAIDPKWFEDIQQLKQMDSTTLRKLG-------- 122
BSNT_03950___ 322 RITKPLIRKNG--AFVESSWEEALDLVASRLGSI-KEQYGKGSVGFISSS 368
||..|||||.| ||...||::|||.:|:::.|| |.|. ..::::.
BPUM_3317 123 RIPYPLIRKKGDNAFTRISWDDALDQIAAKIKSIDKRQL----AFYLTAR 168
BSNT_03950___ 369 KITNEENYVIQKLARQVFETNNVDNCSRYCQSPATDGLFRTVGMGGDAGT 418
.||||..|...|.||.: .||::||.||.|.||:...|.|::|:|..:..
BPUM_3317 169 GITNEVYYSAAKAARFI-GTNHIDNASRICHSPSKTALKRSLGIGASSCN 217
BSNT_03950___ 419 IKDIAKAGLVIIVGANPAEGHPVLATRVKRAHKLHGQKLIVADLRKNEMA 468
..|.....::|..|:..|...|| :|:...|.|..|.|:||.:..|....
BPUM_3317 218 YNDWIGTDVLIFWGSVAANNQPV-STKYMYAAKKKGTKIIVINPYKEPAM 266
BSNT_03950___ 469 ER----------------SDLFISPKQGTDQVWLMAVTKYMIDQGWH--- 499
|: :|.|.....|.|..::..|.|:..|...|
BPUM_3317 267 EKYWVPSIPESALFGTKIADDFYQVNIGGDIAFMNGVIKHWFDMEQHAPH 316
BSNT_03950___ 500 ---DQAFIDENVNYFEDYKETLKTYTLDYAERITGLSKENIIQIAEMIRD 546
|..||..:....:|.::.:.....:..|..:|||||.:.:.|.::.:
BPUM_3317 317 SALDHEFIQAHTTGIQDLQQHVAQLKWEDLEASSGLSKERMKEFAILLAN 366
BSNT_03950___ 547 ADGTCVLWGMGVTQNTGGSDTSAAISNLLLATGNYRRPGAGAYPLRGHNN 596
|:....:|.||:||:...:|..:.::||.:..|...|...|..|:|||:.
BPUM_3317 367 ANSGVFIWSMGLTQHRFATDNISQVANLAMLRGFIGRKHCGVMPIRGHSG 416
BSNT_03950___ 597 VQGACDMGTLPGWLPGYQHITDDKARAKFEEAYGVEIDGKPGLDNI---- 642
|||:.:||..|..|||... |::...:.|:.:|.:|....| |.|
BPUM_3317 417 VQGSGEMGADPFVLPGSDF--DEENIERIEKIWGFDIPKWHG-DTIGQSF 463
BSNT_03950___ 643 --QMLHAIEEGKMKAMYLVGEDMALVDSNANHVHDILSSLDFFVVQDIFL 690
..|......|:|.::..|.:......|.:.:...||.|:..|.|||.|
BPUM_3317 464 EKMALPKEHPQKLKMLFTSGGNFLETMPNPDAIEKALSELELRVHQDIIL 513
BSNT_03950___ 691 SRT----AQYADVVLPATPSLEK--DGTFTNTERRVQRLYQAL----PTL 730
:.: |:...:||||....|: .||.|:|||.| |.:. |.:
BPUM_3317 514 NTSTLVEAEETVIVLPAMTRYEQPGGGTSTSTERMV---YFSPEIEGPRI 560
BSNT_03950___ 731 GDAKPDWWIIQEVANRLGAN----WNYSHPSDIFSEMASLSPLFAKASYE 776
.:|:.:|.|..::|.|:... .::....||..|:| .|..:|:
BPUM_3317 561 EEARAEWDIYIDLAKRVRPEDAELIHFETAEDIRREIA-----IANRNYD 605
BSNT_03950___ 777 VLE----GWNSFLWGSFTGESTPLLYEDG-FNFPDKKARFALSDWTEPAA 821
.:: ..:.|.||. ..|.||| ...||.|.... ||.
BPUM_3317 606 GIQYLRHKGDVFQWGG------AWLCEDGECPTPDGKGHLL------PAQ 643
BSNT_03950___ 822 FPE------EYDLHINNGRMLEH--FHEGNMTNKSKGIQAKVPNVFVEIS 863
.|: .:::....|:.... :.|.:..|..| ...:.::
BPUM_3317 644 LPQYRKTEGHFNITTRRGKQFNSMIYSEKDAFNGGK-------RHSILMN 686
BSNT_03950___ 864 PELAQERGVCDGSLVRL---------VSPFGAVKL----------NALI- 893
.:.|:|..|.:|..|.| |:.||.:|. |.||
BPUM_3317 687 EDDAKELYVKEGDPVVLFNQYGSYQGVAQFGDLKRGNIAVYWPEGNVLIP 736
BSNT_03950___ 894 -----------------------TDRVRKNELYLPMNSTDKESAINFLTG 920
|...||::.|:.....:.|:.:|
BPUM_3317 737 KGVYESYSQIPEYNTAAILEKAETFHARKDQHYVEKRIDELETTLN---- 782
BSNT_03950___ 921 PAADKRTNTPAYKQTKVRMEVLGGCETAPLPKTNPRNKKRHPQNGVEAER 970
BPUM_3317 782 -------------------------------------------------- 782
BSNT_03950___ 971 KWNRPGYVHLTD 982
BPUM_3317 782 ------------ 782
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