Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03950 and BPUM_3317
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_03950___yrhE.1.24716.seq
# -bsequence dna-align/BPUM_3317.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03950___yrhE-BPUM_3317.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03950___yrhE-BPUM_3317.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03950___yrhE
# 2: BPUM_3317
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3429
# Identity: 1453/3429 (42.4%)
# Similarity: 1453/3429 (42.4%)
# Gaps: 1560/3429 (45.5%)
# Score: 2293.0
#
#
#=======================================
BSNT_03950___ 1 ATGAATATGATGGACGGTAAGTCGATCAGTGTCCGTGTAGACGGAACAGA 50
|||| ||||.|.|
BPUM_3317 1 ---------ATGG-----------------------------GGAAAACA 12
BSNT_03950___ 51 AATTCAAGCACGAGCAGGGGCCACAATATTAGATATTTTAAATGAAAACG 100
|| || |..||||||| ||| |||||.
BPUM_3317 13 AA-------AC-ATAAGGGGCC-----------TAT--------AAAACT 35
BSNT_03950___ 101 GAATTGAGTACCCGCA-------GATTTGCCACGTACCAGAGGTTGACCC 143
.|||..|..||||.|| .||..|||.||| |||..||
BPUM_3317 36 TAATAAAAAACCCTCACCAAAGCTATGGGCCTCGT--------TTGCGCC 77
BSNT_03950___ 144 GATTCAAACTTGTGATACTT-GCATAGTAGAGGC-AAACGGCAAGCTGGT 191
|.||..|||| |.|.||||.||.| ||||
BPUM_3317 78 ----------TATGGGACTTGGAAAAGTAAAGCCGAAAC----------- 106
BSNT_03950___ 192 TCGTTCATGCGCGACGGTTGCAGAAAACGGGATGTCTATTGATCTATCAG 241
.|||.||.|| ||..|.
BPUM_3317 107 ----ACATTCGAGA------------------------------TACAAT 122
BSNT_03950___ 242 GAAA-TCGAGTGAAAGAAGCGCAAACCGAAGCGATGGA------CCGCCT 284
|||| |.|.|||..|||| ||| ||| || |||
BPUM_3317 123 GAAAGTGGCGTGGGAGAA---CAA-----------GGATAATCTCC-CCT 157
BSNT_03950___ 285 TCTTGAAAATCATTTGCTGTATTGTA---CA----GTTTGCGATAACAAC 327
.||.|.||| |||||.|| || ||.||.|
BPUM_3317 158 --ATGCATATC-------GTATTTTAACGCAAGGCGTGTGTG-------- 190
BSNT_03950___ 328 AATGGAAACTGTACGCTGCATAATACAGCGGAAATGATGGGGATCGAGCA 377
|.|| ||||.|.||...|..|.||| ||..|| ||| |
BPUM_3317 191 -ACGG---CTGTGCCCTTGGTGTTTCAG-GGTTAT-ATG----------A 224
BSNT_03950___ 378 TCAAA-------AATACC-CATACA--CGCCAAAAGAAGATCCTTCTTGC 417
.|||| |..||| ||||.| |.|||.|||| ||
BPUM_3317 225 CCAAACGCTTGCAGGACCTCATATATGCACCACAAGA--------CT--- 263
BSNT_03950___ 418 GCAGTTGATATGT-CTCATCCTTTTTA--------CCGCTA-TGATCCAA 457
|.|||| || ||.|.||.| |.|||| ||||||||
BPUM_3317 264 -------AAATGTACT--TCGTCTTAATACAATGCCAGCTATTGATCCAA 304
BSNT_03950___ 458 ACCAATGTATTGCCTGCGGCCAGTGTGTTGAGGTCTGTCAAAACCTTCAG 507
|||| || ||||.|.|..||||.|.| |||.
BPUM_3317 305 ---AATG-----------------GT-TTGAAGACATTCAACAGC-TCAA 332
BSNT_03950___ 508 GTAAATGAA----AC-ACTCTCAATCG---ACTGGG-------------- 535
..|||||.| || ||||| ||| |||.||
BPUM_3317 333 ACAAATGGACAGCACTACTCT---TCGCAAACTTGGCCGTATCCCTTATC 379
BSNT_03950___ 536 ---------------AACGCG--AACGCCCT--CGCGTCAT---TTGGGA 563
||.|.| ||.|||.| ||||| || ||||||
BPUM_3317 380 CACTCATTCGAAAAAAAGGTGACAATGCCTTTACGCGT-ATTTCTTGGGA 428
BSNT_03950___ 564 TGAGGGAGTTCCGATCAATGAATCTTCCTGTGTCAGCTGCGGTCAGTGTG 613
|||.|.| |..||||| |||| .|||||....|||
BPUM_3317 429 TGATGCA--TTAGATCA---AATC--------GCAGCTAAAATCA----- 460
BSNT_03950___ 614 TCACAGTATGTCCATGTAATGCACTGATGGAAAAATCAATGCTCGGGCAG 663
|||..|.|||| |||..|..||||
BPUM_3317 461 -----------------AATCAATTGAT----AAACGACAGCTC------ 483
BSNT_03950___ 664 GCTGGCTTTATGAC------AGGGATTAAAGAGGACGTCATGGAACCGAT 707
|||..||.|.|.|| ||||||||.|.|.||.|| |.||
BPUM_3317 484 GCTTTCTATTTAACAGCTAGAGGGATTACAAATGAAGT--------CTAT 525
BSNT_03950___ 708 GATTGACCTCGTGAAAAATGTTGAACCGGGGTATGGCAGCATTTTTGCCA 757
.||| ||.| ||.||| |||||| |.||
BPUM_3317 526 TATT--CCGC-TGCAAA-----------------GGCAGC----TCGC-- 549
BSNT_03950___ 758 TTTCTGAAGTCGAAGCGGCAATGCGTGAAACGAGAACGAAAAA----AAC 803
||| |.||| ||.||| |..
BPUM_3317 550 TTT----------ATCGG-------------------GACAAATCATATT 570
BSNT_03950___ 804 GAAAACTGTATGTACGTTCTGCGGTGTCGGGTGTTCATTTG--AAGTATG 851
||.|| ||| ||||.| |||||| |...|..
BPUM_3317 571 GATAA--------------TGC---GTCGCG----CATTTGTCATTCACC 599
BSNT_03950___ 852 GA-CAAAAGGACGGGATATTTTAAAGATCCAGCCTGTTTCTGATGCTCCG 900
|| ||||| || ||||
BPUM_3317 600 GAGCAAAA------------------------CC----------GCTC-- 613
BSNT_03950___ 901 GTTAACGCGATTTCCACATGTGTCAAAGGGAAATTCGGC-TGGGATTTCG 949
|||| |||| ||| | ||||||
BPUM_3317 614 -TTAA-GCGA--TCC-----------------------CTTGGGAT---- 632
BSNT_03950___ 950 TCAATTCTGAGGAGC---------GAATCACAAAGCCTTTAATCCGTAAA 990
|||||| .|||.||||.|.| |..|||.|.|.|
BPUM_3317 633 ---------AGGAGCCTCCAGCTGTAATTACAACGAC-TGGATCGGAACA 672
BSNT_03950___ 991 AATGGAGCCTTTGTGGAATCTTCTTGGGAAGAGGCCCTCGATCTTGTCGC 1040
.|| |.||| ||| ||.||||| |||| ||||||
BPUM_3317 673 GAT---GTCTT-----AAT-TTTTTGGG-----------GATC-TGTCGC 701
BSNT_03950___ 1041 AAGCAGATTAGGATCAATTAAAGAGCAGTACGGTAAAGGCTCTGTCGGGT 1090
|||| |.|||| |||..||
BPUM_3317 702 -AGCA-------AACAAT-------CAGCCCG------------------ 718
BSNT_03950___ 1091 TTATTTCTTCTTCTAAAAT-TACGAATGAAGAAAACTACGTC-ATTCAAA 1138
||||..|| |||| ||.|.||| ||.| | |||
BPUM_3317 719 ---TTTCCACT----AAATATATGTATG----------CGGCGA---AAA 748
BSNT_03950___ 1139 AGCTAGCGCGTCAGGTATTTGAAACAAA--CAATGTCGATAACTGCTCAC 1186
||..|| |||.|||| .|.|||| ||.|.|.|..||
BPUM_3317 749 AGAAAG--------------GAACCAAAATTATTGTC-ATCAATCCGTAC 783
BSNT_03950___ 1187 -----GCTACTGCCAGTCTCCTGCTACAG-AC-GGATTGTTCCGCACTGT 1229
|| |||||| ||..|.|| || || ||||| |.||.|
BPUM_3317 784 AAGGAGC--CTGCCA------TGGAAAAGTACTGG---GTTCC-CTCTAT 821
BSNT_03950___ 1230 --CGGCATGGGCGGTGACGCT----GGCACGATTAAA-----GAT-ATTG 1267
|.|.|.|.| |.|| |||||.| ||| ||| |||.
BPUM_3317 822 TCCAGAAAGTG------CTCTATTCGGCACAA--AAATTGCGGATGATTT 863
BSNT_03950___ 1268 CCAAAGCCGGTCTCGTCATCATCGTCGGCGCCAATCCGGCG-----GAAG 1312
|.| ||..||||..||.|.||||| ||...||| |||.
BPUM_3317 864 CTA-------TCAAGTCAATATAGGCGGCG---ATATTGCGTTTATGAAT 903
BSNT_03950___ 1313 GACACCCGGTGCTCGCAACACGCGTCAAACGGGCGCACAAGCTTCACGGT 1362
| |.|||| |
BPUM_3317 904 G--------------------GTGTCA----------------------T 911
BSNT_03950___ 1363 CAAAAACTGATTGTTGCCGACCTGCGTAAAAATGAGATGG---------- 1402
||||.|.||.|| |||.||||
BPUM_3317 912 CAAACATTGGTT--------------------TGACATGGAGCAACACGC 941
BSNT_03950___ 1403 --------CCGAGC--GATC-TGA-TCTGTTCATCAGCCCTAAACAA--G 1438
|||..| |||| ||| |.|.|||| ||||| |.||.| |
BPUM_3317 942 GCCCCATTCCGCACTTGATCATGAGTTTATTCA--AGCCC-ATACTACCG 988
BSNT_03950___ 1439 GC--ACAGACCAAGTCTGGCTGATGGCTGTTACGAAATATATGATCGACC 1486
|| |||| ||| |||| |.|
BPUM_3317 989 GCATACAG-------------GAT-----TTAC--------------AGC 1006
BSNT_03950___ 1487 AAGGC---TGGCACGATCAGGCGTTTATTGATGAGAATGTTAATTACTTT 1533
| || |.||||.|| ||| |||| .
BPUM_3317 1007 A--GCATGTCGCACAAT--------------TGA-AATG----------G 1029
BSNT_03950___ 1534 GAAGATTATAAAGAAACTCTTAAAACGTATACGCTTGATTATGCAGAACG 1583
||||| .|||.||.||| |||
BPUM_3317 1030 GAAGA------------CCTTGAAGCGT-----CTT-------------- 1048
BSNT_03950___ 1584 CATCACAGGCCTTTCAAAAGAAAACATCATTCAAATTGCTGAAATGATCC 1633
|||||.|.||||||||||..||.|...||.||||| ||||
BPUM_3317 1049 -----CAGGCTTATCAAAAGAAAGAATGAAGGAATTTGCT------ATCC 1087
BSNT_03950___ 1634 GTGATGCTGACGGTACTT------GTGTCCTTTGGGGAATGGGTGTCACA 1677
.|..|||..|.|..|.|| .|.||.|||||.|.||||||.|.||.
BPUM_3317 1088 TTCTTGCCAATGCCAATTCAGGCGTTTTCATTTGGAGCATGGGTCTTACC 1137
BSNT_03950___ 1678 CAAAA---------TACAGGCGGTTCTGATACATCAGCA----GCCATTT 1714
||..| .|||| .|.|||.|||| || |||
BPUM_3317 1138 CAGCACCGCTTTGCAACAG------ATAATATATCA-CAGGTCGCC---- 1176
BSNT_03950___ 1715 CAAACC-TGCT-TCTCGCTACGGGCAACTATCGCC----------GTCCA 1752
|||| |||| | |.||||.|.|..|||.|.| ||
BPUM_3317 1177 --AACCTTGCTAT---GTTACGTGGATTTATTGGCAGAAAACATTGT--- 1218
BSNT_03950___ 1753 GGTGCCGGCGCTTAT-CCTCTGCGCGGACACAATAAC---GTGCAAGGCG 1798
|||| |.|| ||..|.|||||.| |||.| ||.|||||..
BPUM_3317 1219 GGTG-------TCATGCCAATTCGCGGGC---ATAGCGGTGTTCAAGGTT 1258
BSNT_03950___ 1799 CATGTGATATGGGAACATTGCCTGGCTGGC----------TGCCGGGATA 1838
||.||||.||||| .||||.| |||||||
BPUM_3317 1259 CAGGTGAAATGGG----------TGCTGACCCGTTTGTTTTGCCGGG--- 1295
BSNT_03950___ 1839 TCAG-CATATTACAGATGACAAGGCCCGCGCTAAAT-TTG-AAGAGGC-- 1883
||| .||.|| |||||..| |||| ||| ||||..|
BPUM_3317 1296 -CAGTGATTTT---GATGAAGA----------AAATATTGAAAGAATCGA 1331
BSNT_03950___ 1884 ----ATATGGTG--TCGAGATTGATGGAAA--GCCTGGTTTAGATAATAT 1925
||.|||.| |.||.||| ..|||| ||.|||| ||.|.|||
BPUM_3317 1332 AAAGATTTGGGGGTTTGACATT--CCGAAATGGCATGGT---GACACTAT 1376
BSNT_03950___ 1926 T---CAAATGCTTCATGCCATTGAAGAA--GG------------------ 1952
| ||| |||| |||||.|| ||
BPUM_3317 1377 TGGGCAA-----TCAT----TTGAAAAAATGGCGCTCCCAAAAGAGCATC 1417
BSNT_03950___ 1953 ----AAAAATGAAA--GCTAT------------GTATCTTGT------CG 1978
||||.|.||| |||.| |.|.|||.| ||
BPUM_3317 1418 CACAAAAACTCAAAATGCTGTTTACGAGCGGCGGGAACTTTTTAGAAACG 1467
BSNT_03950___ 1979 GTG-------AGGATATGGCACTGGTCGATTCAAACGC------------ 2009
.|| .|||| || |.|||| |||.||
BPUM_3317 1468 ATGCCAAATCCGGAT---GC---GATCGA---AAAAGCTTTATCTGAGCT 1508
BSNT_03950___ 2010 -GAA--CCATGTGCAT---GATAT--TTTATCAAGCCTTGATTTCTTC-- 2049
||| ||.|||.||| ||||| || ||||.|.||||
BPUM_3317 1509 TGAACTCCGTGTCCATCAAGATATCATT---------TTGAATACTTCTA 1549
BSNT_03950___ 2050 --GTGGTACAGGACA-----------------TCTTCCTGTCAAGAACAG 2080
.|.|||.||| || |||.||||..|.||..||
BPUM_3317 1550 CACTTGTAGAGG-CAGAAGAGACGGTAATTGTTCTCCCTGCTATGACAAG 1598
BSNT_03950___ 2081 CTCAATAT--GCTGATGTCGTCTTGCCGGC--CACTCCTTCACTTGAAAA 2126
|||| ||.| |..|.|||| .||| |.||||
BPUM_3317 1599 ----ATATGAGCAG-------CCAGGCGGCGGTACT--TCCACT------ 1629
BSNT_03950___ 2127 AG-ACGGAAC---------ATTTACCAACACAGAACGCCGTGTCCAGCGA 2166
|| ||||||| |||| || ||||||..|
BPUM_3317 1630 AGTACGGAACGCATGGTATATTT-------CA---------GTCCAGAAA 1663
BSNT_03950___ 2167 TTGTATCAGGCGCTTCCGACGCTTGGTGACGCAAAACCGGACTGGTGGAT 2216
||| |.|..|.||.|| |||..||.||.|.|.|.||.|| ||||
BPUM_3317 1664 TTG----AAGGACCTCGGA---TTGAGGAGGCCAGAGCAGAATG--GGAT 1704
BSNT_03950___ 2217 -----TATTCAAGAGGTGGCAAACCGTTTAGGAGCGAATTGGAATTACAG 2261
|||| ||..|.||||| |.||| |||.|
BPUM_3317 1705 ATTTATATT---GATCTTGCAAA------AAGAG-----------TACGG 1734
BSNT_03950___ 2262 CC-----ATCC--AAGTGA--CATTTTCTCTGAAATGGC--GAGTCTTTC 2300
|| ||.| |..||| ||||| .||||.||| .||.|.|||
BPUM_3317 1735 CCTGAAGATGCTGAGCTGATTCATTT----CGAAACGGCTGAAGACATTC 1780
BSNT_03950___ 2301 TCC-TCTGTTTGC-----CAAAGC-AAGCTATGAGGTGCTTGAAGGCT-- 2341
.|| |..|.|||| ||||.| ||.||||||.| ||.|..||..|
BPUM_3317 1781 GCCGTGAGATTGCGATTGCAAATCGAAACTATGATG-GCATCCAGTATTT 1829
BSNT_03950___ 2342 ----------GGA-ACAGCTTCCTATGGGGCAGCTTCACAGGTGAAAGCA 2380
||| ||...||.|.|||||| ||||
BPUM_3317 1830 ACGTCATAAAGGAGACGTTTTTCAATGGGG---------AGGT------- 1863
BSNT_03950___ 2381 CACCGCTT--CTGTATGAAGACGGATTTAATTTC-----CCTGAC-AAAA 2422
||.| ||.|.|||||||||| .|.|.|| ||.||| ..||
BPUM_3317 1864 ----GCCTGGCTATGTGAAGACGGA--GAGTGTCCAACACCGGACGGCAA 1907
BSNT_03950___ 2423 AAGCCCGCTTTGCCCTTTCTGATTGGACCGAGCCAGCGGCATTTCCGGAG 2472
|.|.|..||| |||.||| .|||||
BPUM_3317 1908 AGGGCATCTT----CTTCCTG----------CCCAGC------------- 1930
BSNT_03950___ 2473 GAATATGACCTTCATATC-AATAACGGCCGGATGCTGGAGCATTT----- 2516
.||||..|||.| ||.|||.|..||| |||||
BPUM_3317 1931 ------TACCTCAATACCGAAAAACCGAGGGA--------CATTTTAATA 1966
BSNT_03950___ 2517 CCACGA-------AGGAAACATGACAAATAAATCGAAAGGCATCCA---- 2555
.||||| |||||| .|||.|.||| ||||
BPUM_3317 1967 TCACGACAAGAAGAGGAAA----GCAATTCAAT---------TCCATGAT 2003
BSNT_03950___ 2556 ----AGCGAAA---GTGCCAAATGTATTCGTTGAGA--------TCTCAC 2590
||||||| .|||| |.||.| |.||.|| |||..|
BPUM_3317 2004 CTATAGCGAAAAGGATGCC---TTTAAT-GGTGGGAAGCGTCATTCTATC 2049
BSNT_03950___ 2591 CTG--------AGCT--TGCACAAGAGCGAGGTGTTTGTGACGGTTCGCT 2630
.|| ||.| |||..||||||
BPUM_3317 2050 TTGATGAATGAAGATGATGCTAAAGAGC---------------------- 2077
BSNT_03950___ 2631 TGTACGGCTCGTTTCTCCGTTCGGAGCAGTCAAATTGAACGCGCTGATCA 2680
|||.| |||||| ||| |.|||||
BPUM_3317 2078 -----------TTTAT------------GTCAAA--GAA---GGTGATC- 2098
BSNT_03950___ 2681 CAGACCGGGTACGGAAAAATG--------AACTCTATTTGCCAATGAACT 2722
||| .|| || ||.|| |||.|..
BPUM_3317 2099 CAG---------------TTGTTTTGTTTAA-TCAAT------ATGGATC 2126
BSNT_03950___ 2723 CGACAGACAAGGAGTCAGCAATTAACTT-----CTTG--ACGGGCCCTGC 2765
|.|| ||||||||| || |.||.|| .||| |||.| ||
BPUM_3317 2127 CTAC---CAAGGAGTC-GC--TCAATTTGGGGATTTGAAACGTG----GC 2166
BSNT_03950___ 2766 A-----GCTG---AT------AAACGGACGAACACGCCTGCTTATAA--A 2799
| |||| || .||.||| ||| ||.||| .
BPUM_3317 2167 AATATTGCTGTGTATTGGCCAGAAGGGA-----ACG-----TTTTAATTC 2206
BSNT_03950___ 2800 CAGACAAAGGTCCGCATGGAAGTGC----------TTGGCGGCTGTGAAA 2839
|| ||.|||..|.||| ||.|| ||..||..|.|.|.|
BPUM_3317 2207 CA---AAGGGTGTGTATG--AGAGCTACTCACAGATTCCCGAATATAATA 2251
BSNT_03950___ 2840 CAGCGCCGC----TTCCAAAAA---CAAA---TCCGCGCAACAAAAAACG 2879
|.||| || ||..||||| .||| |.|..||||.||||.||
BPUM_3317 2252 CGGCG--GCCATATTAGAAAAAGCCGAAACCTTTCATGCAAGAAAAGAC- 2298
BSNT_03950___ 2880 GCATCCGCAAAACGGAGTCGAAGCAGAAA-GAA------AAT--GGAACC 2920
|||.||...|| |.||||| ||| ||| |.||||
BPUM_3317 2299 -------CAACACTACGT----GGAGAAACGAATTGATGAATTAGAAACC 2337
BSNT_03950___ 2921 GCCCTGGCTATGTCCATCTGACTGATTAA 2949
.||.|| |..|||
BPUM_3317 2338 ACCTTG---------AATTGA-------- 2349
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