Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05587 and BPUM_3309

See DNA alignment / Visit BSNT_05587 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence pep-align/BSNT_05587___ywnC.1.24716.seq
#    -bsequence pep-align/BPUM_3309___ywnG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05587___ywnC-BPUM_3309___ywnG.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05587___ywnC-BPUM_3309___ywnG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05587___ywnC
# 2: BPUM_3309___ywnG
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 142
# Identity:      45/142 (31.7%)
# Similarity:    71/142 (50.0%)
# Gaps:          17/142 (12.0%)
# Score: 166.5
# 
#
#=======================================

BSNT_05587___      1 -MNPETMNKTLISISKWGKATGILFIIMGAITALSGAFFFLIGAVPGVLQ     49
                      ...|.:.::|.||:||||...|...|.|.:..|.| |:.::.|..||..
BPUM_3309___y      1 MQQTEKIIQSLHSITKWGKVGSIFLYISGGLAILIG-FWLVLPAALGVFL     49

BSNT_05587___     50 IISGIFLMRSAREAGQMAEHNSGQSEDLMLENYAKFVKMQGIYLIVSIAV     99
                     |:.||.:.:|...|.|:.:......|:| ||.|||.:|||.::.|.||..
BPUM_3309___y     50 IMMGIHVQKSVNAAEQLIQAPDTSYEEL-LEQYAKMMKMQTLFAISSIVA     98

BSNT_05587___    100 SILAIIAFFIFLML-GIA------------DGLFSDTYSTY-    127
                     :||:.||..:.|:| |:|            :|.:.:....: 
BPUM_3309___y     99 AILSFIAIILMLILGGLAFLQEIPSDIQQYEGEYEEELGDFY    140


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.