Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05587 and BPUM_3309

See Amino acid alignment / Visit BSNT_05587 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_05587___ywnC.1.24716.seq
#    -bsequence dna-align/BPUM_3309___ywnG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05587___ywnC-BPUM_3309___ywnG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05587___ywnC-BPUM_3309___ywnG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05587___ywnC
# 2: BPUM_3309___ywnG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 510
# Identity:     241/510 (47.3%)
# Similarity:   241/510 (47.3%)
# Gaps:         213/510 (41.8%)
# Score: 469.5
# 
#
#=======================================

BSNT_05587___      1 ATGAATCCTGAAACAA--TGAACAAAACC-------CTCATCAGCATTTC     41
                            .||.|||||  || |.||||.|       |||.|||    |||
BPUM_3309___y      1 -------TTGCAACAAACTG-AGAAAATCATTCAATCTCTTCA----TTC     38

BSNT_05587___     42 G------AAATGGGGAAAAGCTACAGGCATTTTATTTAT---TATTATGG     82
                     |      ||.||||||||||.|   ||.|.|.|||||.|   ||||...|
BPUM_3309___y     39 GATCACAAAGTGGGGAAAAGTT---GGTAGTATATTTCTCTATATTTCAG     85

BSNT_05587___     83 GC------GCAATTACCGC------GCTTTCAGGCGCGTTCTTTTTTCTA    120
                     ||      ||.|||    |      ||||| .|||..||||||       
BPUM_3309___y     86 GCGGCCTAGCTATT----CTTATTGGCTTT-TGGCTTGTTCTT-------    123

BSNT_05587___    121 ATCGGTGCCGTGC--CA---GGCGTACTGCAAATTATTTCCGGTATCTTT    165
                             |.|||  ||   |||||           .||||    ||.||
BPUM_3309___y    124 --------CCTGCTGCACTTGGCGT-----------CTTCC----TCATT    150

BSNT_05587___    166 TTGATGAGGTCAGCTAGGGAAGC--AGGCCAAA----TG--------GCT    201
                     .||||           |||||.|  .|..||||    ||        |||
BPUM_3309___y    151 ATGAT-----------GGGAATCCATGTACAAAAATCTGTAAACGCAGCT    189

BSNT_05587___    202 GAACA--CAAT---AG---CGGACA-GTCT---GAAGACTTAATGCTGGA    239
                     |||||  .|||   ||   |.||.| .|||   |||||.|||   .||||
BPUM_3309___y    190 GAACAATTAATTCAAGCTCCTGATACTTCTTACGAAGAGTTA---TTGGA    236

BSNT_05587___    240 GAATTACGCGAAATTCGTAAAGATGCAAGGGA-TTTATTTG----ATCGT    284
                     ..|.||.||.||..|..|.||.|||||   || ..|.||||    |||  
BPUM_3309___y    237 ACAATATGCTAAGATGATGAAAATGCA---GACGCTGTTTGCCATATC--    281

BSNT_05587___    285 AAGCATTGCTGTATCCATTCTTGCGATT-ATCGCC-TTCTTCATCTTTTT    332
                     |||.||||..|.|.|||||||..| ||| |||||| ||            
BPUM_3309___y    282 AAGTATTGTCGCAGCCATTCTCTC-ATTCATCGCCATT------------    318

BSNT_05587___    333 AATGCTTGGGATTGCTGAT----GGC------------CTT---------    357
                      ||.||   || |||||||    |||            |||         
BPUM_3309___y    319 -ATCCT---GA-TGCTGATATTAGGCGGTCTAGCATTTCTTCAAGAAATT    363

BSNT_05587___    358 ----------TTCAGCGATACG--------TAC-------AGC------A    376
                               ||||||.|||.|        |||       |||      |
BPUM_3309___y    364 CCTAGTGACATTCAGCAATATGAAGGTGAATACGAAGAAGAGCTTGGTGA    413

BSNT_05587___    377 C--TTATTAA    384
                     |  |||||||
BPUM_3309___y    414 CTTTTATTAA    423


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