Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05587 and BPUM_3309
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05587___ywnC.1.24716.seq
# -bsequence dna-align/BPUM_3309___ywnG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05587___ywnC-BPUM_3309___ywnG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05587___ywnC-BPUM_3309___ywnG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05587___ywnC
# 2: BPUM_3309___ywnG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 510
# Identity: 241/510 (47.3%)
# Similarity: 241/510 (47.3%)
# Gaps: 213/510 (41.8%)
# Score: 469.5
#
#
#=======================================
BSNT_05587___ 1 ATGAATCCTGAAACAA--TGAACAAAACC-------CTCATCAGCATTTC 41
.||.||||| || |.||||.| |||.||| |||
BPUM_3309___y 1 -------TTGCAACAAACTG-AGAAAATCATTCAATCTCTTCA----TTC 38
BSNT_05587___ 42 G------AAATGGGGAAAAGCTACAGGCATTTTATTTAT---TATTATGG 82
| ||.||||||||||.| ||.|.|.|||||.| ||||...|
BPUM_3309___y 39 GATCACAAAGTGGGGAAAAGTT---GGTAGTATATTTCTCTATATTTCAG 85
BSNT_05587___ 83 GC------GCAATTACCGC------GCTTTCAGGCGCGTTCTTTTTTCTA 120
|| ||.||| | ||||| .|||..||||||
BPUM_3309___y 86 GCGGCCTAGCTATT----CTTATTGGCTTT-TGGCTTGTTCTT------- 123
BSNT_05587___ 121 ATCGGTGCCGTGC--CA---GGCGTACTGCAAATTATTTCCGGTATCTTT 165
|.||| || ||||| .|||| ||.||
BPUM_3309___y 124 --------CCTGCTGCACTTGGCGT-----------CTTCC----TCATT 150
BSNT_05587___ 166 TTGATGAGGTCAGCTAGGGAAGC--AGGCCAAA----TG--------GCT 201
.|||| |||||.| .|..|||| || |||
BPUM_3309___y 151 ATGAT-----------GGGAATCCATGTACAAAAATCTGTAAACGCAGCT 189
BSNT_05587___ 202 GAACA--CAAT---AG---CGGACA-GTCT---GAAGACTTAATGCTGGA 239
||||| .||| || |.||.| .||| |||||.||| .||||
BPUM_3309___y 190 GAACAATTAATTCAAGCTCCTGATACTTCTTACGAAGAGTTA---TTGGA 236
BSNT_05587___ 240 GAATTACGCGAAATTCGTAAAGATGCAAGGGA-TTTATTTG----ATCGT 284
..|.||.||.||..|..|.||.||||| || ..|.|||| |||
BPUM_3309___y 237 ACAATATGCTAAGATGATGAAAATGCA---GACGCTGTTTGCCATATC-- 281
BSNT_05587___ 285 AAGCATTGCTGTATCCATTCTTGCGATT-ATCGCC-TTCTTCATCTTTTT 332
|||.||||..|.|.|||||||..| ||| |||||| ||
BPUM_3309___y 282 AAGTATTGTCGCAGCCATTCTCTC-ATTCATCGCCATT------------ 318
BSNT_05587___ 333 AATGCTTGGGATTGCTGAT----GGC------------CTT--------- 357
||.|| || ||||||| ||| |||
BPUM_3309___y 319 -ATCCT---GA-TGCTGATATTAGGCGGTCTAGCATTTCTTCAAGAAATT 363
BSNT_05587___ 358 ----------TTCAGCGATACG--------TAC-------AGC------A 376
||||||.|||.| ||| ||| |
BPUM_3309___y 364 CCTAGTGACATTCAGCAATATGAAGGTGAATACGAAGAAGAGCTTGGTGA 413
BSNT_05587___ 377 C--TTATTAA 384
| |||||||
BPUM_3309___y 414 CTTTTATTAA 423
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