Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05489 and BPUM_3270

See DNA alignment / Visit BSNT_05489 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence pep-align/BSNT_05489___alsR.1.24716.seq
#    -bsequence pep-align/BPUM_3270___alsR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05489___alsR-BPUM_3270___alsR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05489___alsR-BPUM_3270___alsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05489___alsR
# 2: BPUM_3270___alsR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 302
# Identity:     172/302 (57.0%)
# Similarity:   224/302 (74.2%)
# Gaps:           4/302 ( 1.3%)
# Score: 921.5
# 
#
#=======================================

BSNT_05489___      1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKR     50
                     |||||||||:.||||||||:||.|||||||||||||||.|||:|..|..|
BPUM_3270___a      1 MELRHLQYFVTVAEELHFGRAAARLNMTQPPLSQQIKQFEEELGFPLFHR     50

BSNT_05489___     51 TKRFVELTAAGEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGS    100
                     :||.|||||||::||:..|..|.|:.:.::.|:.|||||.|.::|||||:
BPUM_3270___a     51 SKRVVELTAAGKVFLHEVRGVLHQLDKAVDHARHTARGELGKIIIGFVGT    100

BSNT_05489___    101 ATYEFLPPIVREYRKKFPCVKIELREISSSRQQEELLKGNIDIGILHPPL    150
                     |||:.|||:|||:|:.:|.|.|||.::|..:|...||.|.||||.|||..
BPUM_3270___a    101 ATYDILPPVVREFRELYPSVSIELEQLSVPQQLGALLNGEIDIGFLHPTS    150

BSNT_05489___    151 QHTALHIETAQSSPCVLALPKQHPLTSKESITIEDLRDEPIITVAKEAWP    200
                     .|..|.....:.|.|:.|:||.|||..||::||||:|:||||::::|:||
BPUM_3270___a    151 PHEELISRLMKQSECIFAIPKNHPLAKKEAVTIEDIRNEPIISLSQESWP    200

BSNT_05489___    201 TLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGMTFVPSSAKKLF    250
                     :||..|:..||:.||.|||||||.|||||||||:||||:..:|.||::||
BPUM_3270___a    201 SLYQHFVLLCEKYGFSPNIVQEAAEYQMVIGLVTAGIGIAVIPKSARRLF    250

BSNT_05489___    251 NLDVTYRKMDQIQLNAEWVIAYRKDNHNPLIKHFIHISNCQQTRTKESDA    300
                     ||||.||.::..||.|||.|:||::||||.:.|.:|  :.......||:|
BPUM_3270___a    251 NLDVVYRSIEGEQLLAEWTISYRRENHNPALFHLVH--HILHRTESESEA    298

BSNT_05489___    301 GT    302
                       
BPUM_3270___a    298 --    298


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.