Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05489 and BPUM_3270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05489___alsR.1.24716.seq
# -bsequence dna-align/BPUM_3270___alsR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05489___alsR-BPUM_3270___alsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05489___alsR-BPUM_3270___alsR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05489___alsR
# 2: BPUM_3270___alsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 992
# Identity: 585/992 (59.0%)
# Similarity: 585/992 (59.0%)
# Gaps: 178/992 (17.9%)
# Score: 1521.5
#
#
#=======================================
BSNT_05489___ 1 ATGGAGCTTCGCCATCTTCAATACTTTATCGCAGTAGCCGAAGAGCTTCA 50
|||||.||..|.|||.|.||.||.|||.||.|||||||.||.|||||.||
BPUM_3270___a 1 ATGGAACTGAGACATTTGCAGTATTTTGTCACAGTAGCGGAGGAGCTGCA 50
BSNT_05489___ 51 TTTCGGAAAGGCTGCCCGGCGGCTGAACATGACGCAGCCTCCTCTCAGCC 100
|||.||.|..||.|||...|||.||||.|||||.||||||||.||.||.|
BPUM_3270___a 51 TTTTGGCAGAGCAGCCGCACGGTTGAATATGACACAGCCTCCACTTAGTC 100
BSNT_05489___ 101 AGCAGATCAAACAGCTGGAGGAAGAAGTCGGAGTTAC---GCTTCTGAAA 147
||||.||.||.||..|.||.||||||.|.|||.||.| |.||| |.
BPUM_3270___a 101 AGCAAATTAAGCAATTTGAAGAAGAATTGGGATTTCCTTTGTTTC---AC 147
BSNT_05489___ 148 AGGACAAAACGATTTGTCGAGCTTACCGCAGCAGGAGAAATCTTTTTAAA 197
.||.|.||.|||.|.||.|||||.||.||.||.|||.|..||||||||.|
BPUM_3270___a 148 CGGTCGAAGCGAGTAGTGGAGCTAACAGCTGCTGGAAAGGTCTTTTTACA 197
BSNT_05489___ 198 TCA----------TTGCCGCATGGCCTTGATGCAAATCGGACAAGGAATT 237
|.| .|||.||||...|||||| |||.|.| ||
BPUM_3270___a 198 TGAGGTGCGGGGTGTGCTGCATCAGCTTGAT--AAAGCCG--------TT 237
BSNT_05489___ 238 GAACTGGCACAGCGGACGGCCCGCGGCGAGC-------AAGGCCTTCTCG 280
||.|..||.|.||..||.||..|.||.|||| || ||.
BPUM_3270___a 238 GATCATGCCCGGCATACAGCAAGAGGAGAGCTGGGAAAAA-------TCA 280
BSNT_05489___ 281 TAATCGGTTTTGTCGGATCAGCTACATATGAATTTCTGCCGCCGATTGTC 330
|.||.||.|||||.|||.||||.||||||||..|||||||.||..||||.
BPUM_3270___a 281 TCATAGGGTTTGTTGGAACAGCGACATATGATATTCTGCCACCAGTTGTA 330
BSNT_05489___ 331 CGGGAATATC--------GTAAAAAATTCCCATGTGTGAAAATAGAACTG 372
||.|||| || ||| |||| |.|||.|..||.||.|||
BPUM_3270___a 331 CGCGAAT-TCAGAGAGCTGTA------TCCC-TCTGTCAGTATTGAGCTG 372
BSNT_05489___ 373 CGTGAAATATCCTCGTCTAGGCAGCA---AGAGGAGCTACTAAAGGGCAA 419
|.|.|...|.||..|| .|||||| ||..|.|||..||||.||..|
BPUM_3270___a 373 -GAGCAGCTTTCTGTTC--CGCAGCAGCTAGGCGCGCTTTTAAATGGGGA 419
BSNT_05489___ 420 CATTGATATTGGTATACTTCATCCTCCCTTACAGCATACAGCTTTACATA 469
.||||||||.|||.| .|||||.|.||||.||...|||
BPUM_3270___a 420 GATTGATATCGGTTT------------TTTACATCCTACATCTCCTCAT- 456
BSNT_05489___ 470 TCGA--AACCGCCCAAAGCAGCCCT------------------TGTGTTT 499
|| |||.| |.|||||.| |||.|||
BPUM_3270___a 457 --GAAGAACTG-----ATCAGCCGTTTGATGAAGCAAAGTGAATGTATTT 499
BSNT_05489___ 500 TAGCTTTGCCTAAGCAACACCCATTGACTTCTAAGGAATCAA-------T 542
|.||..|.||.||..|.||.||..||.| |||..|| |
BPUM_3270___a 500 TTGCGATTCCGAAAAATCATCCGCTGGC-------GAAAAAAGAGGCGGT 542
BSNT_05489___ 543 TACGATTGAGGATTTAAGAGATGAACCAATTATTACTGTTGCTAAAGAAG 592
.|||||.||.|||.|..||.|||||||.||||||.||.|..|..|.|||.
BPUM_3270___a 543 CACGATCGAAGATATTCGAAATGAACCGATTATTTCTTTATCACAGGAAT 592
BSNT_05489___ 593 CATGGCCTACTCTATA-CATGGATTTTATTCAGTTCTGTGAACAAG--CG 639
|||||||..|.||.|| || ..|.|||.|.|.|.|.|||||| ||| ||
BPUM_3270___a 593 CATGGCCGTCCCTTTATCA-ACACTTTGTCCTGCTATGTGAA-AAGTACG 640
BSNT_05489___ 640 GG-CTTCAGACCCAACATTGTCCAGGAAGCCACAGAATATCAAATGGTGA 688
|| .||| .||.||.||.||.||||||||..|.||||||||||||||||
BPUM_3270___a 641 GGTTTTC--TCCAAATATCGTGCAGGAAGCGGCGGAATATCAAATGGTGA 688
BSNT_05489___ 689 TTGGTTTAGTCAGCGCCGGAATTGGTATGACATT-TGTTCCTTCC----T 733
||||..|.||||..||.||.||.|| |||| .|.||.|||| |
BPUM_3270___a 689 TTGGCCTTGTCACAGCTGGGATCGG-----CATTGCGGTCATTCCGAAAT 733
BSNT_05489___ 734 CAGCCAAAAAATTATTTAATTTGGATGTTACTTATCGAAAAATGGACCAA 783
|||||......|||||||||.|.||||||...|||||....||.|| |.
BPUM_3270___a 734 CAGCCCGGCGTTTATTTAATCTAGATGTTGTGTATCGGTCGATTGA--AG 781
BSNT_05489___ 784 AT--ACAGCTTAATGCCGAATGGGTTATCGCTTACCGCAAAGAC-----A 826
.| |||||||...||.|||||| .||.||.|| .|.|||| |
BPUM_3270___a 782 GTGAACAGCTTCTGGCAGAATGG----ACGATTTCC-TATAGACGAGAAA 826
BSNT_05489___ 827 ATCATAATCC-GCTTATAAAGCATTTTATTCATATTTCAAATTGT-CAGC 874
|||||||||| |||| |||||||..|||| ||.|
BPUM_3270___a 827 ATCATAATCCTGCTT-----------------TATTTCATCTTGTCCACC 859
BSNT_05489___ 875 AGA-----CA-AGAACTAAAGAGAGTGATGCAGGTACATGA- 909
|.| || .|.|| .|||..|||..|||...||| |
BPUM_3270___a 860 ATATCCTGCATCGCAC---CGAGTCTGAATCAGAGGCAT-AG 897
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