Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05481 and BPUM_3268

See DNA alignment / Visit BSNT_05481 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence pep-align/BSNT_05481___rbsB.1.24716.seq
#    -bsequence pep-align/BPUM_3268___rbsB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05481___rbsB-BPUM_3268___rbsB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05481___rbsB-BPUM_3268___rbsB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05481___rbsB
# 2: BPUM_3268___rbsB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 305
# Identity:     243/305 (79.7%)
# Similarity:   270/305 (88.5%)
# Gaps:           0/305 ( 0.0%)
# Score: 1221.0
# 
#
#=======================================

BSNT_05481___      1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKDFTIGLSVSTLNNP     50
                     |||.:.:|||||||:|:|||||||:|||.:..|.|||..||||:||||||
BPUM_3268___r      1 MKKYLILILTLSLFMLSACSLEPPEWAKSTKDGKKKDIKIGLSISTLNNP     50

BSNT_05481___     51 FFVSLKKGIEKEAEKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLIN    100
                     ||||||.|:.|||:|.|::|:|.||||||:||||||||||||||||||||
BPUM_3268___r     51 FFVSLKNGVTKEAKKLGIEVVIADAQNDSAKQTSDVEDLIQQGVDALLIN    100

BSNT_05481___    101 PTDSSAISTAVESANAVGVPVVTIDRSAEQGKVETLVASDNVKGGEMAAA    150
                     |.||||||||||||||..:||:|:|||||.||||.||||||||||||||.
BPUM_3268___r    101 PADSSAISTAVESANASDIPVITLDRSAESGKVEALVASDNVKGGEMAAN    150

BSNT_05481___    151 FIADKLGKGAKVAELEGVPGASATRERGSGFHNIADQKLHVVTKQSADFD    200
                     ||.||:||||||||||||||||||||||.|||.|||:.|.|..||:||||
BPUM_3268___r    151 FIIDKVGKGAKVAELEGVPGASATRERGKGFHQIADKDLKVTAKQAADFD    200

BSNT_05481___    201 RTKGLTVMENLLQGHPDIQAVFAHNDEMALGALEAINSSGKDILVIGFDG    250
                     |||||.||||||||:|||:|||||||||||||||||.||||||||:||||
BPUM_3268___r    201 RTKGLNVMENLLQGNPDIKAVFAHNDEMALGALEAIQSSGKDILVVGFDG    250

BSNT_05481___    251 NKDALASIKDGKLSATVAQQPELIGKLATEAADDILHGKKVQKTISAPLK    300
                     |:|||.|||.||||||||||||||||||..||.|:|.||||:|.|:||||
BPUM_3268___r    251 NEDALNSIKAGKLSATVAQQPELIGKLAVGAASDVLKGKKVEKNIAAPLK    300

BSNT_05481___    301 LETQK    305
                     ||.:|
BPUM_3268___r    301 LEQKK    305


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