Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05481 and BPUM_3268
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_05481___rbsB.1.24716.seq
# -bsequence dna-align/BPUM_3268___rbsB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05481___rbsB-BPUM_3268___rbsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05481___rbsB-BPUM_3268___rbsB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05481___rbsB
# 2: BPUM_3268___rbsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 947
# Identity: 675/947 (71.3%)
# Similarity: 675/947 (71.3%)
# Gaps: 58/947 ( 6.1%)
# Score: 2281.0
#
#
#=======================================
BSNT_05481___ 1 ATGAAAAAGGCAGTATC-----CGTCATTTTAACGTTATCATTATTTTTG 45
||||||| |.|||| | |||||||.||..|.|||||.||..||
BPUM_3268___r 1 ATGAAAA----AATATCTCATTC-TCATTTTGACTCTCTCATTGTTCATG 45
BSNT_05481___ 46 TTAACCGCCTGTTCGCTTGAGCCTCCCCAATGGGCAAAGCCTTCAAACTC 95
.|..|.|||||.|||||.||.||.||..|.|||||.||..|..||||...
BPUM_3268___r 46 CTTTCTGCCTGCTCGCTAGAACCGCCAGAGTGGGCCAAATCAACAAAAGA 95
BSNT_05481___ 96 GGGGAACAAAAAGGATTTCACCATCGGCTTGTCCGTCTCAACGCTT-AAT 144
.|||||.|||||.||..|||..|||||..|.||..||||.|| ||| ||.
BPUM_3268___r 96 TGGGAAGAAAAAAGACATCAAAATCGGTCTCTCGATCTCGAC-CTTAAAC 144
BSNT_05481___ 145 AATCCTTTTTTTGTCTCATTAAAAAA--GGGTATCGA-AAAAGAAGCTGA 191
||.||.||.||.||.||..|.||||| |||| || ||||||||| ||
BPUM_3268___r 145 AACCCATTCTTCGTTTCTCTCAAAAACGGGGT---GACAAAAGAAGC-GA 190
BSNT_05481___ 192 AAAA-CGGGGAATGAAAGTGATCATTGTTGATGCACAAAATGATTCATCG 240
|||| |..||.||..||||..||||||..||||||||||||||||||.||
BPUM_3268___r 191 AAAAGCTTGGCATCGAAGTTGTCATTGCAGATGCACAAAATGATTCAGCG 240
BSNT_05481___ 241 AAACAGACGAGTGACGTGGAAGATTTAATTCAGCAAGGTGTTGATGCATT 290
|||||.||.||||||||.||||||||||||||||||||.||.||.||.||
BPUM_3268___r 241 AAACAAACAAGTGACGTAGAAGATTTAATTCAGCAAGGGGTCGACGCCTT 290
BSNT_05481___ 291 ATTAATCAACCCGACTGATTCTTCGGCGATCTCAACGGCAGTAGAATCTG 340
|.|.||||||||..|.||.||.||.||.||.||.||.||.||.|||||.|
BPUM_3268___r 291 ACTTATCAACCCAGCGGACTCGTCTGCTATATCGACTGCTGTTGAATCAG 340
BSNT_05481___ 341 CAAACGCAGTC-GGTGTGCCCGTCGTAACAATCGATCGATCTGCCGAACA 389
|.||.|| .|| |.|.|.||.|||.|.|||.|.||.||.||.||.|||..
BPUM_3268___r 341 CGAATGC-TTCTGATATTCCAGTCATCACATTAGACCGCTCAGCTGAAAG 389
BSNT_05481___ 390 AGGAAAAGTTGAAACTCTCGTTGCTTCCGATAATGTAAAAGGCGGTGAAA 439
.||||||||.|||.|.||.|||||.||.|||||.||.||||||||.||||
BPUM_3268___r 390 CGGAAAAGTAGAAGCACTTGTTGCCTCAGATAACGTCAAAGGCGGCGAAA 439
BSNT_05481___ 440 TGGCCGCGGCGTTTATTGCCGATAAACTTGGAAAAGGAGCAAAGGTGGCA 489
||||.||....|||||...|||.||..|.||.||||||||.||.||.||.
BPUM_3268___r 440 TGGCGGCCAATTTTATCATCGACAAGGTCGGTAAAGGAGCCAAAGTCGCT 489
BSNT_05481___ 490 GAGCTTGAAGGCGTCCCCGGCGCATCTGCCACACGGGAACGCGGCTCAGG 539
||..|.|||||.||.||.|||||.|||||.|||||.||.|||||...|||
BPUM_3268___r 490 GAATTAGAAGGTGTACCAGGCGCTTCTGCTACACGTGAGCGCGGAAAAGG 539
BSNT_05481___ 540 ATTTCATAACATCGCAGA-------CCAAAAGCTCCATGTTGTCA-CAAA 581
|||.||..|.||.||||| |.||||| ||.|| ||||
BPUM_3268___r 540 ATTCCACCAAATAGCAGATAAAGATCTAAAAG--------TGACAGCAAA 581
BSNT_05481___ 582 ACAATCAGCTGACTTTGACCGCACGAAAGGCCTGACTGTCATGGAAAACC 631
||||.|.||||||||.|||||.||.|||||..|||.||||||||||||||
BPUM_3268___r 582 ACAAGCGGCTGACTTCGACCGAACAAAAGGATTGAATGTCATGGAAAACC 631
BSNT_05481___ 632 TGCTGCAGGGACATCCTGATATCCAAGCTGTTTTTGCTCACAACGATGAA 681
|.||.||.|||.|.|||||.|||.|||||||||||||.|||||.||||||
BPUM_3268___r 632 TCCTTCAAGGAAACCCTGACATCAAAGCTGTTTTTGCCCACAATGATGAA 681
BSNT_05481___ 682 ATGGCGCTCGGTGCTCTCGAAGCAATTAACAGCTCGGGAAAAGACATATT 731
|||||.||.||.|||||.|||||||||.|.|||||.|||||||||||..|
BPUM_3268___r 682 ATGGCACTTGGCGCTCTAGAAGCAATTCAAAGCTCTGGAAAAGACATTCT 731
BSNT_05481___ 732 GGTAATCGGCTTTGACGGCAATAAAGACGCGCTCGCTTCCATTAAAGACG 781
.||..|.|||||||||||.||..||||.||.|||..|||.||.||||..|
BPUM_3268___r 732 CGTCGTTGGCTTTGACGGAAACGAAGATGCACTCAATTCAATCAAAGCAG 781
BSNT_05481___ 782 GAAAGCTGTCAGCCACCGTAGCTCAGCAGCCTGAATTAATCGGTAAACTG 831
||||.||.||.|||||.||.||.||||||||.||.||.|||||.|||||.
BPUM_3268___r 782 GAAAACTATCTGCCACAGTCGCCCAGCAGCCAGAGTTGATCGGGAAACTA 831
BSNT_05481___ 832 GC------TACAG-AAGCAGCAGATGATATTTTGCACGGAAAAAAAGTGC 874
|| |.|.| |||| ||..|.||..|.||.||||||||
BPUM_3268___r 832 GCAGTCGGTGCTGCAAGC-------GACGTCTTAAAAGGGAAAAAAGT-- 872
BSNT_05481___ 875 AAAAAACAATAT--CCGCGCCTCTCAAACTAGAAACA-CAAAAATAA 918
|.||||.||.|| |.||.||.||.||||||| |||| .||||||||
BPUM_3268___r 873 AGAAAAGAACATCGCAGCACCACTGAAACTAG-AACAGAAAAAATAA 918
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