Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05475 and BPUM_3264

See DNA alignment / Visit BSNT_05475 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence pep-align/BSNT_05475___rbsK.1.24716.seq
#    -bsequence pep-align/BPUM_3264___rbsK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05475___rbsK-BPUM_3264___rbsK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05475___rbsK-BPUM_3264___rbsK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05475___rbsK
# 2: BPUM_3264___rbsK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 293
# Identity:     189/293 (64.5%)
# Similarity:   222/293 (75.8%)
# Gaps:          12/293 ( 4.1%)
# Score: 970.0
# 
#
#=======================================

BSNT_05475___      1 -----------MDLVVTSDKRPKAGETVLGTSFQTVPGGKGANQAVAAAR     39
                                |||||||:|||.|||||||.||:|||||||||||||:||
BPUM_3264___r      1 MSHIVVVGSCSMDLVVTSNKRPNAGETVLGESFKTVPGGKGANQAVASAR     50

BSNT_05475___     40 LGAQVFMVGKVGDDHYGTAILNNLKANGVCTDYMEPVTHTESGTAHIVLA     89
                     |||.|:|:|:||||.||..||:||:..||.|.||:|||..|||||||:||
BPUM_3264___r     51 LGADVYMIGRVGDDTYGQDILSNLQDQGVRTSYMKPVTEMESGTAHIILA    100

BSNT_05475___     90 EGDNSIVVVKGANDDITPAYALKALEQIEKVDMVLIQQEIPEETVDEVCK    139
                     |||||||||||||:::||.|..:||..|:.:.|||||||||||||:.||.
BPUM_3264___r    101 EGDNSIVVVKGANNEVTPDYVREALSTIDDIGMVLIQQEIPEETVEAVCA    150

BSNT_05475___    140 YCHSLDIPIMLNPAPARPLKQETIDHATYLTPNEHESSILFPDLTTSEAL    189
                     .|...:||::|||||||.:.|:.:|.|||:||||||:.::|...:..:||
BPUM_3264___r    151 ICSKKEIPVILNPAPARKVSQQVLDQATYITPNEHEAVLMFNGRSIEDAL    200

BSNT_05475___    190 ALYPAKLFITEGKQGVRYSAGSKEVLIPSFPVEPVDTTGAGDTFNAAFAV    239
                     ..||.||.|||||.||||..|.||||:|.||||.|||||||||||.|.||
BPUM_3264___r    201 RQYPNKLLITEGKNGVRYFDGLKEVLVPGFPVEAVDTTGAGDTFNGALAV    250

BSNT_05475___    240 ALAEGKDIEAALRFANRAASLSVCSFGAQGGMPTRNEVEELLS    282
                     ||.|||.:..||.|||.|||:||..||||||||||.|:|... 
BPUM_3264___r    251 ALTEGKSLYDALAFANLAASMSVTKFGAQGGMPTREELERKK-    292


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.