Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05475 and BPUM_3264
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_05475___rbsK.1.24716.seq
# -bsequence dna-align/BPUM_3264___rbsK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05475___rbsK-BPUM_3264___rbsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05475___rbsK-BPUM_3264___rbsK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05475___rbsK
# 2: BPUM_3264___rbsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 931
# Identity: 593/931 (63.7%)
# Similarity: 593/931 (63.7%)
# Gaps: 134/931 (14.4%)
# Score: 1813.5
#
#
#=======================================
BSNT_05475___ 1 ---------------------------------ATGGATTTAGTAGTCAC 17
|||||||||||.|||||
BPUM_3264___r 1 ATGAGTCATATTGTCGTAGTAGGAAGCTGCTCTATGGATTTAGTCGTCAC 50
BSNT_05475___ 18 CTCGGACAAACGCCCAAAAGCCGGTGAAACGGTTCTTGGCACGTCATTTC 67
.|||.|.|||||.|||||.|||||||||||.||..|.|||...||||||.
BPUM_3264___r 51 TTCGAATAAACGACCAAATGCCGGTGAAACAGTGTTAGGCGAATCATTTA 100
BSNT_05475___ 68 AGACTGTGCCGGGCGGCAAAGGAGCAAATCAGGCCGTTGCCGCAGCAAGA 117
|.||.||.||.||.||.|||||.||.|||||.||.||.|||...|||||.
BPUM_3264___r 101 AAACCGTCCCAGGTGGAAAAGGCGCCAATCAAGCAGTCGCCAGTGCAAGG 150
BSNT_05475___ 118 CTTGGGGCGCAAGTGTTTATGGTCGGCAAGGTTGGAGACGATCA-TTATG 166
||.||.||..|.||.|..|||.|||||...||.||.||.|| || |||||
BPUM_3264___r 151 CTCGGTGCTGATGTATACATGATCGGCCGAGTCGGTGATGA-CACTTATG 199
BSNT_05475___ 167 GAACAGCTATATTGAATAATCTCAAAGCTAACGGCGTTTGCA-CTGACTA 215
|...||.|||..|.|..|||.|..|||.|.|.||.|||.||| ||.| ||
BPUM_3264___r 200 GTCAAGATATTCTCAGCAATTTACAAGATCAAGGGGTTCGCACCTCA-TA 248
BSNT_05475___ 216 TATGGAACCGGTTACACATACGGAAAGCGGAACCGCTCATATTGTGCTTG 265
||||.||||||||||..|.|.|||||||||.||.||||||||..|..|.|
BPUM_3264___r 249 TATGAAACCGGTTACCGAAATGGAAAGCGGCACGGCTCATATCATTTTAG 298
BSNT_05475___ 266 CTGAAGGTGACAACAGCATTGTCGTTGTCAAAGGCGCGAACGATGACATC 315
|.||||||||.||||||||||||||.||||||||.||.||..|.||..||
BPUM_3264___r 299 CAGAAGGTGATAACAGCATTGTCGTGGTCAAAGGGGCAAATAACGAGGTC 348
BSNT_05475___ 316 ACCCCAGCGTATGCGTTAA---AAGCGCTT----GAACAGATTGAAAAGG 358
||.||.|..|||| ||| ||||.||| .||.||| |||.|
BPUM_3264___r 349 ACTCCTGACTATG---TAAGAGAAGCACTTTCTACAATAGA-TGATA--- 391
BSNT_05475___ 359 TCGATATGGTGCTGATTCAGCAGGAAATCCCAGAAGAAACGGTTGATGAG 408
|.|..||||||||.||||||||||||||.||.|||||||||||.||.|..
BPUM_3264___r 392 TTGGAATGGTGCTCATTCAGCAGGAAATACCTGAAGAAACGGTCGAAGCT 441
BSNT_05475___ 409 GTGTGCAAATACTGCCATTCTC-------TCGATATCCCGATCATGCTAA 451
||.||| ||||||..| ..||.|||||..|.||..|||
BPUM_3264___r 442 GTCTGC-------GCCATTTGCAGCAAAAAAGAAATCCCTGTGATTTTAA 484
BSNT_05475___ 452 ACCCGGCACCGGCCCGCCCGCTCAAG-----CAGGAAACCATTGATCACG 496
||||.|||||.|||||| .||| |||.||....|.||.||.|
BPUM_3264___r 485 ACCCTGCACCTGCCCGC-----AAAGTATCACAGCAAGTGTTAGACCAGG 529
BSNT_05475___ 497 CCACCTATCTGACGCCGAATGAACACGA----GTCTTCGAT-TTTATT-- 539
|.||||||.|.||.||||||||.||||| ||..|| || ||||.|
BPUM_3264___r 530 CTACCTATATTACACCGAATGAGCACGAAGCTGTTCTC-ATGTTTAATGG 578
BSNT_05475___ 540 -CCCTGATCTTACCACTTCTGAAGCTCTGGCGCTTTATCCGGCAAAGCTC 588
|.|| ||.| |||| |.|||.| |.||.|||..|.|
BPUM_3264___r 579 ACGCT--------CAAT--TGAA-----GACGCCT--TGCGTCAATACCC 611
BSNT_05475___ 589 T----------TTATTACGGAAGGAAAACAAGGCGTCCGCTATT----CG 624
| |.|||||.|||||||||.|.||.||.||.|||| ||
BPUM_3264___r 612 TAACAAATTACTGATTACTGAAGGAAAAAATGGGGTTCGATATTTTGACG 661
BSNT_05475___ 625 GCTGGCAGCAAAGAAGTGCTCATCCCGTCCTTCCCTGTTGAGCCCGTTGA 674
|.|.| |||||||||||..||||...|||.||.||.||..|.|||||
BPUM_3264___r 662 GATTG----AAAGAAGTGCTAGTCCCAGGCTTTCCAGTCGAAGCAGTTGA 707
BSNT_05475___ 675 TACAACCGGAGCCGGTGATACGTTTAACGCAGCATTTGCCGTGGCCCTGG 724
||||||.|||||.||.|||||.|||||||.|||.||.||.||.|||.|..
BPUM_3264___r 708 TACAACAGGAGCAGGCGATACCTTTAACGGAGCCTTGGCTGTTGCCTTAA 757
BSNT_05475___ 725 CTGAGGGAAAAGATATTGAAGCCGCA-TTGCGGTTTGCCAATCGAGCGGC 773
|.|||||.|||..|.|..|.|.|||| |||| .||.||.||.|..||.||
BPUM_3264___r 758 CAGAGGGCAAATCTCTCTATGACGCACTTGC-CTTCGCTAACCTTGCAGC 806
BSNT_05475___ 774 TTCCCTTTCTGTCTGTTCC---TTCGGTGCCCAAGGCGGAATGCCGACAA 820
.||..|.|||||| .|| ||||||||.||||||||.|||||.||||
BPUM_3264___r 807 ATCAATGTCTGTC---ACCAAGTTCGGTGCACAAGGCGGCATGCCAACAA 853
BSNT_05475___ 821 GAAATGAA--GTAGAGGAGCTGCTGTCATGA 849
||.|.||| |.||||.| .|..||||
BPUM_3264___r 854 GAGAAGAACTGGAGAGAA-----AGAAATGA 879
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