Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03298 and BPUM_3247

See DNA alignment / Visit BSNT_03298 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence pep-align/BSNT_03298___kduD.1.24716.seq
#    -bsequence pep-align/BPUM_3247___kduD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03298___kduD-BPUM_3247___kduD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03298___kduD-BPUM_3247___kduD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03298___kduD
# 2: BPUM_3247___kduD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 257
# Identity:     171/257 (66.5%)
# Similarity:   203/257 (79.0%)
# Gaps:           3/257 ( 1.2%)
# Score: 884.0
# 
#
#=======================================

BSNT_03298___      1 ---MGYLHDVFSLEGKTALVTGPGTGIGQGIAKALAGAGADIIGTSHTSS     47
                        ..|:..:||||||||||||||||||||||.|||.:|||||||.|.:.
BPUM_3247___k      1 MTTASYVASLFSLEGKTALVTGPGTGIGQGIAVALARSGADIIGTYHHTP     50

BSNT_03298___     48 LSETQQLVEKEGRIFTSFTLDMSKPEAIKDSAADLFENRQIDILVNNAGI     97
                     |.||:.|||:.||.|.:..:|.|.|::.|.:...:.:...||||:||||.
BPUM_3247___k     51 LEETKALVEQAGRSFHAVQVDFSDPQSAKQAVDAMLQKHTIDILINNAGT    100

BSNT_03298___     98 IHREKAEDFSEENWQHVLNVNLHSLFILTQLAGRHMLKRGHGKIINIASL    147
                     |.||:|..:|||:|..|::||::|||.|||..||.|||.|.|||:|||||
BPUM_3247___k    101 IKREQAAHYSEEDWHTVMDVNINSLFFLTQRVGRQMLKNGQGKIVNIASL    150

BSNT_03298___    148 LSFQGGILVPAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTANT    197
                     ||||||:.||||||||||||||||:||||||...|||||||||||:|.||
BPUM_3247___k    151 LSFQGGVFVPAYTASKHAVAGLTKAFANEWANQHIQVNAIAPGYIATNNT    200

BSNT_03298___    198 KPIRDDEKRNEDILKRIPAGRWGHADDIGGTAVFLASRASDYVNGHILAV    247
                     :.|||||.|||:|||||||||||..:|:.|.||||:|.||||:|||||||
BPUM_3247___k    201 QAIRDDENRNEEILKRIPAGRWGKPEDLAGAAVFLSSPASDYMNGHILAV    250

BSNT_03298___    248 DGGWLSR    254
                     |||||:|
BPUM_3247___k    251 DGGWLAR    257


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