Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03298 and BPUM_3247

See Amino acid alignment / Visit BSNT_03298 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_03298___kduD.1.24716.seq
#    -bsequence dna-align/BPUM_3247___kduD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03298___kduD-BPUM_3247___kduD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03298___kduD-BPUM_3247___kduD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03298___kduD
# 2: BPUM_3247___kduD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 840
# Identity:     531/840 (63.2%)
# Similarity:   531/840 (63.2%)
# Gaps:         141/840 (16.8%)
# Score: 1607.0
# 
#
#=======================================

BSNT_03298___      1 ----------------ATGGGTTATCTACATGACGTCTTTTCATTAGAAG     34
                                     |||   ||.|..|    |.|||||||..|.||||
BPUM_3247___k      1 ATGACAACAGCATCCTATG---TAGCGTC----CCTCTTTTCTCTTGAAG     43

BSNT_03298___     35 GAAAAACAGCGCTGGTGACAGGCCCGGGAACAGGGATCGGTCAAGGTATT     84
                     |.||||||||.||.||||||||.||.|||||.||.||.||.||.||.|||
BPUM_3247___k     44 GCAAAACAGCCCTTGTGACAGGTCCTGGAACGGGCATTGGGCAGGGCATT     93

BSNT_03298___     85 GCCAAAGCCCTAGCCGGAGCTGGCGCTGATATTATCGGCACAT--CA-CA    131
                     ||....||.||.|||.|..|.|||||.||||||||||||||||  || ||
BPUM_3247___k     94 GCTGTGGCGCTTGCCAGGTCAGGCGCAGATATTATCGGCACATACCACCA    143

BSNT_03298___    132 TACA-------AGCAGTCTGTCTGAAAC-ACAGCAGCTTGTGGAAAAGGA    173
                     ||||       ||          ||||| |.||| ||||||.|||.|||.
BPUM_3247___k    144 TACACCGCTTGAG----------GAAACGAAAGC-GCTTGTCGAACAGGC    182

BSNT_03298___    174 AGGCCGGATATTTACATCTTTTACAT----------TGGACATGAGCAAG    213
                     .|||||         .||.||| |||          |.|||.|...|.|.
BPUM_3247___k    183 GGGCCG---------CTCGTTT-CATGCGGTTCAGGTTGACTTTTCCGAT    222

BSNT_03298___    214 CCGGAA---GCGATAAAGGATTCTGCAGCTGACCTGTTTGAAAACAGGCA    260
                     ||..||   ||   ||||.|..|||..|.||.|.||||..||||   |||
BPUM_3247___k    223 CCTCAAAGTGC---AAAGCAAGCTGTCGATGCCATGTTACAAAA---GCA    266

BSNT_03298___    261 ---GATCGACATCCTTGTCAATAATGCCGGCATTATTCATCGGGAAAAAG    307
                        |||.||.||..|..||||||||||.||||..|||        |||||
BPUM_3247___k    267 TACGATTGATATTTTAATCAATAATGCTGGCACCATT--------AAAAG    308

BSNT_03298___    308 CG-GAAG-------ATTTTTCAGAAGAGAACTGGCAGCACGTAC-----T    344
                     .| |.||       |||.||||||.||..|.|||||     |||     |
BPUM_3247___k    309 AGAGCAGGCCGCTCATTATTCAGAGGAAGATTGGCA-----TACGGTCAT    353

BSNT_03298___    345 GAATGTCAATCTACACAGCCTGTTTATTCTGACACA---GCTTGCTGGCA    391
                     |.||||.|||.|..|.||.||.|||.|.||.||.||   |.|||  ||| 
BPUM_3247___k    354 GGATGTGAATATCAATAGTCTCTTTTTCCTCACCCAAAGGGTTG--GGC-    400

BSNT_03298___    392 GGCACATGCTGAAAAGAGGTCACGGAAAGATTATTAATATTGCCTCTCTC    441
                     ||||.||||||||||..||.||.||.||.||..|.|||||.|||||.||.
BPUM_3247___k    401 GGCAGATGCTGAAAAATGGGCAAGGGAAAATCGTCAATATCGCCTCCCTT    450

BSNT_03298___    442 CTGTCTTTTCAAGGCGGCATCCTCGTTCCGGCTTACACCGCGAGCAAACA    491
                     ||.||.||||||||||||.||.|.||.||.|||||.||.||.||.|||||
BPUM_3247___k    451 CTATCATTTCAAGGCGGCGTCTTTGTCCCCGCTTATACAGCAAGTAAACA    500

BSNT_03298___    492 CGCTGTTGCCGGTTTGACAAAATCATTTGCAAATGAGTGGG-----CAGC    536
                     |||.||.||.||..||||.||..|.||||||||.||.||||     ||||
BPUM_3247___k    501 CGCAGTCGCAGGGCTGACGAAGGCCTTTGCAAACGAATGGGCGAACCAGC    550

BSNT_03298___    537 GTCAGGTATTCAGGTCAACGCAATCGCCCCAGGCTATATTTCTACTGCCA    586
                          .|||.||.||.|||||.|||||.||.||.||.|||.|.|   |||
BPUM_3247___k    551 -----ATATACAAGTGAACGCGATCGCTCCTGGTTACATTGCGA---CCA    592

BSNT_03298___    587 ATACA-----AAGCCTATTCGGGATGACGAAAAGCGAAATGAGGACATTT    631
                     ||| |     ||||| ||||||||.||.||.||.||||||||.||.|||.
BPUM_3247___k    593 ATA-ATACGCAAGCC-ATTCGGGACGATGAGAATCGAAATGAAGAGATTC    640

BSNT_03298___    632 TAAAGAGAATTCCTGCCGGCCGCTGGGGCCACGCGGATGATAT---CGGG    678
                     |.||..||||.||||||||.||||||||..|..|.||.|||.|   |||.
BPUM_3247___k    641 TCAAACGAATCCCTGCCGGGCGCTGGGGAAAGCCTGAGGATCTAGCCGGT    690

BSNT_03298___    679 GGGACTGCAGTCTTT---TTGGCATCACGTGCTTCAGATTATGTAAATGG    725
                     |.|.|||     |||   ||.|| ||||..||.||.||||||.|.||.||
BPUM_3247___k    691 GCGGCTG-----TTTTCCTTAGC-TCACCAGCCTCCGATTATATGAACGG    734

BSNT_03298___    726 ACATATTTTAGCAGTTGATGGCGGCTGGCTATCCCGCTGA    765
                     .|||||||||||.|||||||||||||||||..|..|.|.|
BPUM_3247___k    735 TCATATTTTAGCTGTTGATGGCGGCTGGCTTGCGAGATAA    774


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03298 and BPUM_3247

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
