Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03295 and BPUM_3245
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence pep-align/BSNT_03295___kdgR.1.24716.seq
# -bsequence pep-align/BPUM_3245___kdgR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03295___kdgR-BPUM_3245___kdgR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03295___kdgR-BPUM_3245___kdgR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03295___kdgR
# 2: BPUM_3245___kdgR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity: 213/339 (62.8%)
# Similarity: 275/339 (81.1%)
# Gaps: 3/339 ( 0.9%)
# Score: 1121.5
#
#
#=======================================
BSNT_03295___ 1 MKKKTTGHTTIKDVAECAGVSKSTVSRYINGKIDAISPEKVKNIKKAIAE 50
||:|.....||.:||..||||||||||||||:.:.||.||||.|||||.|
BPUM_3245___k 1 MKEKKQTKVTINEVAAYAGVSKSTVSRYINGRTNEISIEKVKKIKKAIEE 50
BSNT_03295___ 51 LNYRPSKMAQGLKIKKSKLIGFVVADITNPFSVAAFRGVEEVCDQYGYSI 100
|:||||::|||||::|||:|||:|||||||||||..|||||:||:|||||
BPUM_3245___k 51 LHYRPSQLAQGLKVRKSKVIGFIVADITNPFSVATLRGVEEICDEYGYSI 100
BSNT_03295___ 101 MVCNTDNSPEKEREMLLKLEAHSVEGLILNATGENKDVLRAFAEQQIPTI 150
|||||||.|||||||||||.||.:||||:|.||:|.|:|:.|.:..:|.:
BPUM_3245___k 101 MVCNTDNRPEKEREMLLKLNAHYIEGLIINTTGQNNDILQDFQKDGVPIV 150
BSNT_03295___ 151 LIDRKLPDLKLDTVTTDNRWITKEILQKVYSKGYTDVALFTEPISSISPR 200
|:||||.:||:|||||:||.||.::||::|.|.|..:|.||||:..||||
BPUM_3245___k 151 LVDRKLSELKVDTVTTNNRDITIQLLQQMYEKSYEHIAFFTEPVDGISPR 200
BSNT_03295___ 201 AERAAVYQEMASVQNVNGLVRLHEIDVKDKEQLKAALRSFHKEMPEQKKA 250
.||...|::.|..::...::: |||:|.||||:..|..| .:..:||||
BPUM_3245___k 201 EERKEAYEQTAMSKHKKPIIK--EIDLKQKEQLREELVHF-VQTNQQKKA 247
BSNT_03295___ 251 ILALNGLIMLKIISCMEELGLRIPQDIGIAGFDDTEWYKLIGPGITTIAQ 300
|||.|||:|||:||.:.||||:||:|||:||||||||||||||||||:||
BPUM_3245___k 248 ILAANGLLMLKLISELVELGLKIPEDIGVAGFDDTEWYKLIGPGITTVAQ 297
BSNT_03295___ 301 PSHDMGRTAMERVLKRIDGDKGAPQTIELEAKVIMRKSL 339
|||:||:.||:::..|::||:.|||||:|:.::|:||||
BPUM_3245___k 298 PSHEMGKAAMQKIKTRLEGDESAPQTIQLDGEIIVRKSL 336
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