Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03295 and BPUM_3245
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_03295___kdgR.1.24716.seq
# -bsequence dna-align/BPUM_3245___kdgR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03295___kdgR-BPUM_3245___kdgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03295___kdgR-BPUM_3245___kdgR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03295___kdgR
# 2: BPUM_3245___kdgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1089
# Identity: 704/1089 (64.6%)
# Similarity: 704/1089 (64.6%)
# Gaps: 147/1089 (13.5%)
# Score: 2086.0
#
#
#=======================================
BSNT_03295___ 1 ATGAAAAAGAAAACAACAGGCCATAC------AACCATCAAAGATGTAGC 44
||||||.|||||| || ||.|| .||||||||.||.||.||
BPUM_3245___k 1 ATGAAAGAGAAAA----AG--CAAACGAAAGTGACCATCAACGAAGTGGC 44
BSNT_03295___ 45 TGAATGTGCAGGAGTTTCGAAATCGACAGTTTCCCGCTATATTAA---CG 91
.|..|.||||||.|||||.|||||.||.||.|||.|.|||||.|| |.
BPUM_3245___k 45 CGCTTATGCAGGGGTTTCAAAATCAACTGTATCCAGATATATCAATGGCA 94
BSNT_03295___ 92 GAAAAATTGACGCGATTTCTCCTGAAAAAGTGAAAAACATTAAAAAGGCA 141
|||.||.||| .|||||...||||||.||.|||||.||.|||||.||.
BPUM_3245___k 95 GAACAAATGA---AATTTCGATTGAAAAGGTCAAAAAAATCAAAAAAGCC 141
BSNT_03295___ 142 ATCGCAGAATTGAATTATCGGCCGAGTAAAATGGCACAAGGTTTGAAAAT 191
||.|.||||.||.|||||||.||||||.|..|.||.||||||||||||.|
BPUM_3245___k 142 ATTGAAGAACTGCATTATCGTCCGAGTCAGCTCGCCCAAGGTTTGAAAGT 191
BSNT_03295___ 192 AAAAAAAAGCAAGTTAATCGGATTTGTTGTGGCTGACATTACAAATCCTT 241
||.||||||||||.|.||.||.|||.||||.||.||||||||||||||.|
BPUM_3245___k 192 AAGAAAAAGCAAGGTCATTGGGTTTATTGTAGCCGACATTACAAATCCAT 241
BSNT_03295___ 242 TTTCGGTCGCTGC-TTTCAGGGGAGTCGAAGAGGTTTGTGATCAATATGG 290
|.||.||.||..| .||| |.|||||||||||..||||||||.|||||||
BPUM_3245___k 242 TCTCTGTAGCGACACTTC-GCGGAGTCGAAGAAATTTGTGATGAATATGG 290
BSNT_03295___ 291 ATACAGCATTATGGTGTGCAACACAGATAACAGTCCTGAAAAAGAGCGGG 340
|||||||||.|||||.|||||||||||||||.|.||.||||||||.||.|
BPUM_3245___k 291 ATACAGCATCATGGTATGCAACACAGATAACCGGCCAGAAAAAGAACGAG 340
BSNT_03295___ 341 AAATGCTCTTAAAGCTAGAA-GCCCATTCGGTTGAGGGCTTGATTTTAAA 389
||||||||.|.||.|| ||| ||.||||...||||.||..|.||..|.||
BPUM_3245___k 341 AAATGCTCCTCAAACT-GAATGCGCATTATATTGAAGGTCTCATCATCAA 389
BSNT_03295___ 390 CGCAACGGGGGAAAACAAGGATGTACTGCGCGCTTTTGCTGAACAGCAAA 439
..|.||.||..|.|||||.||..|..|||..|.|||| ||| |||
BPUM_3245___k 390 TACGACAGGCCAGAACAATGACATTTTGCAGGATTTT------CAG-AAA 432
BSNT_03295___ 440 -------TTCCAACAATCTTAATTGACCGGAAACTGCCGGATCTGAAACT 482
|.||.|...||.|..|||||||||||.|..|.||.||.|||.|
BPUM_3245___k 433 GACGGTGTGCCGATTGTCCTTGTTGACCGGAAATTATCTGAACTAAAAGT 482
BSNT_03295___ 483 GGATACCGTAACGACTGACAAC--AGATGGATCACAA---AAGAGATTCT 527
.||.||.||.||.||..|.||| .||| |||||.| ||..|.|||.
BPUM_3245___k 483 CGACACAGTGACAACGAATAACCGTGAT--ATCACGATCCAACTGCTTCA 530
BSNT_03295___ 528 TCAGAAGGTTTACAGCAAAGGGTATACTGATG------TCGCGCTGTTTA 571
.|| ||.||.| .||.|||| || ||| ||||..|.||||
BPUM_3245___k 531 ACA-AATGTAT-GAGAAAAG------CT-ATGAGCACATCGCCTTCTTTA 571
BSNT_03295___ 572 CCGAACC----GATTTCCTCTATCAGCCCTCGTGCAGAAAGAGCAGCTGT 617
|.||.|| ||| ...|||||.|||||||.||||.||..||..|.
BPUM_3245___k 572 CTGAGCCAGTTGAT----GGGATCAGTCCTCGTGAAGAACGAAAAGAAGC 617
BSNT_03295___ 618 GTATCAGGAAATGGCTTCCGT---TCAAAATGTG-AACGGGCTTGTCAGA 663
.||| |||..|.|..||.| |.||.||..| ||| || |
BPUM_3245___k 618 ATAT---GAACAGACAGCCATGAGTAAACATAAGAAAC---CT------A 655
BSNT_03295___ 664 TTGCAT----GAAATTG-------ACGTAAAGGACAA---GGAGCAGCTT 699
|| || ||||||| ||..||||.|||| .|||.||
BPUM_3245___k 656 TT--ATTAAAGAAATTGATTTGAAACAAAAAGAACAATTGCGAGAAG--- 700
BSNT_03295___ 700 AAGGCGGCGCTT---CGTTCTTTTCACAAGGAAATGCCGGAGCAAAAAAA 746
|| ||| |.||.|.|| |||..|||| .||||||||||
BPUM_3245___k 701 AA-------CTTGTCCATTTTGTT--CAAACAAAT----CAGCAAAAAAA 737
BSNT_03295___ 747 AGCGATTCTGGCTTTGAATGGCTTGATTATGCTGAAA----ATCA-TCAG 791
|||||||.|.||....|||||.||..|.||||| ||| |||| |.||
BPUM_3245___k 738 AGCGATTTTAGCAGCCAATGGATTACTGATGCT-AAAGCTGATCAGTGAG 786
BSNT_03295___ 792 C-TGTATGGAAGAGCTTGGCCTGCGCATCCCTCAAGATATAGGGATTGCA 840
| ||| |||.||.||..|....||.||..||||||||||..|.|||
BPUM_3245___k 787 CTTGT-----AGAACTCGGGTTAAAGATTCCAGAAGATATAGGCGTCGCA 831
BSNT_03295___ 841 GGATTCGATGATACGGAGTGGTACAAACTGATCGGTCCAGGCATTACAAC 890
||.||.||||||||.||.|||||.||.|||||.||.||.||.||.|||||
BPUM_3245___k 832 GGCTTTGATGATACAGAATGGTATAAGCTGATTGGGCCTGGAATCACAAC 881
BSNT_03295___ 891 GATCGCCCAGCCGTCACATGATATGGGCAGGACGGCGATGGAACGTGTAT 940
|.|.||||||||.||.|||||.|||||.|...|.||.|||.|
BPUM_3245___k 882 GGTTGCCCAGCCATCTCATGAAATGGGGAAAGCCGCCATGCA-------- 923
BSNT_03295___ 941 TAAAAA---------GGATTGATGGTGACAAAGGAGCGCCTCAAACCATT 981
||||| ||.||||.||.||..||.|.|||||.|||||||||
BPUM_3245___k 924 -AAAAATCAAGACTCGGCTTGAAGGGGATGAAAGTGCGCCACAAACCATT 972
BSNT_03295___ 982 GAATTAGAGGCAAAAGTCATCATGAGAAAGTCACTTTAA 1020
.||.|.||.|.|.||.|||||.|.|||||.||..|.|||
BPUM_3245___k 973 CAACTTGATGGAGAAATCATCGTAAGAAAATCTTTATAA 1011
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