Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05452 and BPUM_3228

See DNA alignment / Visit BSNT_05452 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:04
# Commandline: needle
#    -asequence pep-align/BSNT_05452___tagF.1.24716.seq
#    -bsequence pep-align/BPUM_3228___tagF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05452___tagF-BPUM_3228___tagF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05452___tagF-BPUM_3228___tagF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05452___tagF
# 2: BPUM_3228___tagF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity:     366/775 (47.2%)
# Similarity:   491/775 (63.4%)
# Gaps:          88/775 (11.4%)
# Score: 1835.5
# 
#
#=======================================

BSNT_05452___      1 ---------------------------MDSAIPIKFQLLEIKINDTGLYF     23
                                                :|...|::.:|         .|.
BPUM_3228___t      1 MIEEAVQKKSIVECLKNHDQKIEILLRIDDDRPLEGRL---------FYL     41

BSNT_05452___     24 VFESSVSLDHVDVLAVNRNTKKDMRVPCNKISDSKQLKAAK---VSLDDL     70
                     :....||...| .|.:....:...::..::.|.|.:::..:   :.:.|.
BPUM_3228___t     42 LMRERVSKQEV-YLPLKHLVENQFQIELHEDSFSNKMEQGQTYNLYVTDF     90

BSNT_05452___     71 SNLMID------------------------EAVIDFYVLYKNNKKYQCKK     96
                     |.::.|                        |...|.:. .:||:.|:|:.
BPUM_3228___t     91 SEMLTDSSENEDETEDSSYDSEGDDEEVELEEEEDQFT-SENNQYYKCRL    139

BSNT_05452___     97 RIYTASKPIELSWHKDQANQFIYLPYKTLKGHFALDVLRSKAVAEPDSMK    146
                     |: ....| ||.:.::::...:.:||:|.||:.::.:.|...|.:.:.:.
BPUM_3228___t    140 RL-DVEMP-ELCFIENKSAMLLAVPYRTDKGNASIKIKREMKVKKTNQIS    187

BSNT_05452___    147 LCSDGKLMIGGYTFLLDAEERSLVKSRKLVLK--EISQNDKERFFDFPLK    194
                     |.....|.|.||..::.||....:|:.:::.|  |:...       ||:.
BPUM_3228___t    188 LNETNLLTISGYCGVISAEHSYRIKNIQILFKRGEVEHR-------FPVN    230

BSNT_05452___    195 DVQRGDLSADSSDHTV----GFEVEIDLKKLYEENRMPAFFQFYIEYVGE    240
                     ..::.|:....:|..:    .|.||:.|..|.........::.|:|::.|
BPUM_3228___t    231 YQRKSDVDGYRTDGEIPEIYPFNVEVPLGGLTYSTDKRYIYRMYLEFICE    280

BSNT_05452___    241 DAATGEEIIIKSRTF--RLIDDIDSFSIVDTKKGPARFHIY-PQKRKRSM    287
                     ...|.|.:...|..|  |.|.......|......|.|:.:| .:||::::
BPUM_3228___t    281 VNGTEETLTTPSLVFGDRSIQLKGLVQIQKQNNVPIRYEVYRKKKRRQTL    330

BSNT_05452___    288 CLRMNDYTIRTRAVYFAKGKGKRLMSVIRKGKNKVKKKISGMVKRAYYFT    337
                     .:|:||||::||..|:.|.|.|:    .:|...|:||..:.:|...:..|
BPUM_3228___t    331 GIRINDYTMKTRVKYYVKSKWKK----FKKQIGKIKKVRNRLVTSTFKTT    376

BSNT_05452___    338 FELAGKLPVKKKTVIFESFAGKQYSCNPRAIYEYMKEHHPEYNLIWSVNP    387
                     |:||.||.||||||:||||.|||:|||||.|||||||:||||.|||||..
BPUM_3228___t    377 FQLASKLSVKKKTVVFESFNGKQFSCNPRGIYEYMKENHPEYTLIWSVKK    426

BSNT_05452___    388 SYTEIFEEKNVPYINRFTLKWLFAMARAEFWVVNSRLPLWIPKPKHTTYV    437
                     .:...|:||.:.||||.:|||:|||||||:||||||||||:|||:||||:
BPUM_3228___t    427 GHEAPFKEKGIYYINRLSLKWIFAMARAEYWVVNSRLPLWVPKPEHTTYL    476

BSNT_05452___    438 QTWHGTPLKRLAVDMEEVHMPGTNTEKYKQNFTKEASKWDYLISPNRYST    487
                     ||||||||||||:||:|||||||||:|||:|||||||.||||||||.|||
BPUM_3228___t    477 QTWHGTPLKRLAMDMDEVHMPGTNTKKYKKNFTKEASNWDYLISPNAYST    526

BSNT_05452___    488 EIFARAFQFNKTMIESGYPRNDFLYTDNRPETMKAIKKKMNIPEDKKVIL    537
                     |||.|||||.||||||||||||||:..|..|||:|:|:|||:|.|||:||
BPUM_3228___t    527 EIFTRAFQFQKTMIESGYPRNDFLHNQNNEETMRALKQKMNLPLDKKLIL    576

BSNT_05452___    538 YAPTWRDDQFYKKGKYKFDLDLNMEKLREEIGDNYVIILRMHYLVAENFD    587
                     ||||||||||||||:|||||||::.::|..:||.|:||||||||||||||
BPUM_3228___t    577 YAPTWRDDQFYKKGQYKFDLDLDLHEMRAALGDEYIIILRMHYLVAENFD    626

BSNT_05452___    588 LSPYKGFAYDFSAYEDIRELYMVSDLLITDYSSVFFDFANLKRPMIFFVP    637
                     |.||:|||||||.|||||:|||:||||||||||||||:|||||||:|:||
BPUM_3228___t    627 LGPYEGFAYDFSHYEDIRDLYMISDLLITDYSSVFFDYANLKRPMLFYVP    676

BSNT_05452___    638 DIETYRDKLRGFYFDFEREAPGPLVKTTEGVIEKIKETETSDYRLPDIFE    687
                     |||||||||||||||||:||||||||.|..||:.::|||...:.||..|.
BPUM_3228___t    677 DIETYRDKLRGFYFDFEQEAPGPLVKETASVIDWVRETEQPIFTLPASFA    726

BSNT_05452___    688 PFYERFCYLETGNSSEKVVNRIFE-    711
                     ||||:|||||:|.||::||..:|| 
BPUM_3228___t    727 PFYEKFCYLESGESSKRVVEEVFEE    751


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_05452 and BPUM_3228

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
