Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05452 and BPUM_3228
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:04
# Commandline: needle
# -asequence dna-align/BSNT_05452___tagF.1.24716.seq
# -bsequence dna-align/BPUM_3228___tagF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05452___tagF-BPUM_3228___tagF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05452___tagF-BPUM_3228___tagF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05452___tagF
# 2: BPUM_3228___tagF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2562
# Identity: 1400/2562 (54.6%)
# Similarity: 1400/2562 (54.6%)
# Gaps: 732/2562 (28.6%)
# Score: 3694.0
#
#
#=======================================
BSNT_05452___ 1 ------------------------------ATGGAT-AGTG--------- 10
||.|.| ||||
BPUM_3228___t 1 ATGATTGAAGAAGCCGTTCAGAAGAAAAGTATCGTTGAGTGTTTAAAGAA 50
BSNT_05452___ 11 -CAATTCCGATAAAATTTCAGCTGCTGGAAATAAAAAT------------ 47
|| ||||.||| |||||.||||
BPUM_3228___t 51 CCA----CGATCAAA-------------AAATAGAAATTTTGTTGAGGAT 83
BSNT_05452___ 48 ---TAATGATACTGGCC---------TC---TATTTTGTGTTC------- 75
|.|||||| |||| || ||||||.|.|.|
BPUM_3228___t 84 AGATGATGATA--GGCCATTAGAAGGTCGATTATTTTATTTACTCATGAG 131
BSNT_05452___ 76 -GAAAGTTCTGTCT---------------------CTCTTGATCATGTCG 103
||||| .|||| |||||.|.|||.|.|
BPUM_3228___t 132 AGAAAG---GGTCTCAAAGCAGGAAGTATACCTTCCTCTTAAACATCTAG 178
BSNT_05452___ 104 ATGTTTTGGCAGTTAACCGCAATACGA----AAAAAGA----CATG---- 141
|||.| ||| |.| |||.||| ||||
BPUM_3228___t 179 ------TGGAA---------AAT-CAATTTCAAATAGAGCTTCATGAAGA 212
BSNT_05452___ 142 --------CGTGTACCATGTAACAA----------------AATAAGCGA 167
||..||..|||.||||| .|||.|.||
BPUM_3228___t 213 TTCTTTCTCGAATAAAATGGAACAAGGGCAAACGTACAACTTATATGTGA 262
BSNT_05452___ 168 -------TTC--------------AAAGCAGTTA-AAAGCAG-------C 188
||| |.||.|||.| ||.|.|| |
BPUM_3228___t 263 CGGATTTTTCTGAGATGCTGACTGATAGTAGTGAGAATGAAGATGAAACC 312
BSNT_05452___ 189 GAAAGTATCTTTAGATGACCTATCTAACCTGATGATAGACGAAGCGGTCA 238
| |||..||||.|.|||| .|||.| .|.|||| |||||||.||
BPUM_3228___t 313 G-AAGACTCTTCATATGA---TTCTGA--GGGTGAT-GACGAAGAGG--- 352
BSNT_05452___ 239 TTGATTTTTATGTACTATATAAAAATAATAAAAAATATCAATGTAAAAAG 288
||||.|| .|
BPUM_3228___t 353 TTGAATT-----------------------------------------GG 361
BSNT_05452___ 289 AGGATTTACACAGCATCAAAACCGATTGAGCTGTCTTGGCATAAGGATCA 338
||| ||.|..||.|||.||| ||.||| |.|
BPUM_3228___t 362 AGG--------AGGAAGAAGACCAATT------------CACAAG--TGA 389
BSNT_05452___ 339 AGCCAATCAGTTCATT-TATTTACCGTATAAGAC--------------CC 373
|..|||.|||| ||| ||..|..|||.||||.| ||
BPUM_3228___t 390 AAACAACCAGT--ATTATAAGTGTCGTCTAAGGCTAGATGTGGAGATGCC 437
BSNT_05452___ 374 TAAAAGGCCACTTCGCTCTTGATGTTT--TACGAAGTAAA---GCAGTG- 417
|.|| ||| ||||| ||..||.|||| |||.||
BPUM_3228___t 438 TGAA-----------CTC----TGTTTCATAGAAAATAAAAGTGCAATGC 472
BSNT_05452___ 418 -----GCTGAAC-----CGGACAGCATGAA-GTTATGCTCCGACGGAAAA 456
||||.|| ||.|| |.||.|| ||.|||||.| .|
BPUM_3228___t 473 TCCTTGCTGTACCATATCGTAC-GGATAAAGGTAATGCTTC-------TA 514
BSNT_05452___ 457 TTAATGATC-GGAGGCTATACTTTTCTGCTAGATGCTGAA-GAACGTTCA 504
|||| |||| .||| ||| || ||| |.|||
BPUM_3228___t 515 TTAA-GATCAAGAG----------------AGA-----AATGAA-GGTCA 541
BSNT_05452___ 505 TTAGTAAA--AAGCAGAAAGCTGGTTTTAAAGGAAATTAGCCAAA----- 547
||.||| ||.||||.|.| |...|||.||.|.||
BPUM_3228___t 542 --AGAAAACGAATCAGATATC---------ACTTAATGAGACCAATCTCC 580
BSNT_05452___ 548 --ACGATAAGGAGA------GGTTT------------------------- 564
||.|||||..|| |||.|
BPUM_3228___t 581 TTACTATAAGTGGATATTGTGGTGTCATAAGTGCTGAGCACTCTTATCGA 630
BSNT_05452___ 565 ----------TTTGATTTCCCTTTAAAA-----GACGTTCAGC-GCGG-- 596
||..|.|||..||||||| ||.||..||| .|||
BPUM_3228___t 631 ATCAAAAACATTCAAATTCTGTTTAAAAGGGGCGAAGTGGAGCATCGGTT 680
BSNT_05452___ 597 ---CG--ATCTATCAGC----------------TGATTCTTCAGATCATA 625
|| |.|||||||| ||.||.| ||| |
BPUM_3228___t 681 CCCCGTAAACTATCAGCGAAAAAGTGATGTGGATGGTTAT--AGA----A 724
BSNT_05452___ 626 CCGTAGGGTTTGAGGT---GGAAATTGATC----------TGAAAAAGCT 662
|.|..||| |||.| ||||||..||| ||||....||
BPUM_3228___t 725 CGGATGGG---GAGATCCCGGAAATATATCCATTCAACGTTGAAGTTCCT 771
BSNT_05452___ 663 ATATGAAGA--AA--------ACAG------GATGCCTGCTTTCTTTCAG 696
.||.||.|| || |||| ||| .|.|||.| ||
BPUM_3228___t 772 TTAGGAGGATTAACTTATTCTACAGATAAGAGAT-----ATATCTAT-AG 815
BSNT_05452___ 697 -TTTTATATAGAATACGTAGGTGAAGATGCTGCAACAGGGGAGGAAATCA 745
.|.|||.||||||...||.||||||.|..||.|||||..||| |
BPUM_3228___t 816 AATGTATTTAGAATTTATATGTGAAGTTAATGGAACAGAAGAG------A 859
BSNT_05452___ 746 TTATAAAAAGCAGGACAT-TCAGGCTGATTGATGATATAGACAGTTTTTC 794
.|.|||.|| || .||| ||..| ||.||| ||.||.|| ||
BPUM_3228___t 860 CTTTAACAA-CA--CCATCTCTTG-TGTTTG--GAGATCGA-------TC 896
BSNT_05452___ 795 AATTGTTGACACAAAAAAAGGACCGGCTCGT------------------- 825
.||| |||..||||| |.|||||
BPUM_3228___t 897 TATT-------CAACTAAAGG---GACTCGTCCAAATACAAAAGCAGAAT 936
BSNT_05452___ 826 --TTTCACA-------------TTTATCCGCAGAA------GCGA-AAAC 853
|.||.|| |.||||...|||| .||| ||||
BPUM_3228___t 937 AATGTCCCAATTCGATATGAGGTGTATCGAAAGAAAAAGAGACGACAAAC 986
BSNT_05452___ 854 G---GAGCATGTGTCTAAGAATGAATGATTACACGATCAGAACCCGTGCG 900
| | |||| || ||||.||||||||.||.||.|..||.||||.|
BPUM_3228___t 987 GCTAG-GCAT---TC---GAATCAATGATTATACAATGAAGACTCGTGTG 1029
BSNT_05452___ 901 GTTTATTTTGCCAAAGGAAAAGGTAAAAGGCTGATGTCAGTCATCCGTAA 950
...||.|..|.||||.|.||..|.|| ||.|| ||| ||
BPUM_3228___t 1030 AAGTACTACGTCAAAAGCAAGTGGAA------GAAGT---TCA-----AA 1065
BSNT_05452___ 951 AGGCAAGAA----TAAAGTAAAGAAA------AAGATTTCGGGCATGGTG 990
|.||| || ||||.|||||||| || |.|.| |.|||
BPUM_3228___t 1066 AAGCA--AATCGGTAAAATAAAGAAAGTCCGTAA-----CCGTC-TTGTG 1107
BSNT_05452___ 991 AAGAGGGCATACTATTTT-------ACTTTTGAACTGGCCGGCAAACTGC 1033
|..|| ||..|| ||.|||.|.||.||..||||.|||.
BPUM_3228___t 1108 ACAAG-------TACCTTCAAAACGACCTTTCAGCTTGCGAGCAAGCTGT 1150
BSNT_05452___ 1034 CTGTTAAAAAGAAAACCGTCATTTTTGAAAGCTTTGCCGGTAAGCAGTAC 1083
||||.|||||||||||.||..||||||||||.|||...||.||.||.|..
BPUM_3228___t 1151 CTGTGAAAAAGAAAACTGTTGTTTTTGAAAGTTTTAATGGAAAACAATTT 1200
BSNT_05452___ 1084 AGCTGCAATCCAAGAGCAATTTATGAATATATGAAGGAACATCACCCGGA 1133
||.||.||.||..|.|..||.|||||.||||||||.|||.||||.||.||
BPUM_3228___t 1201 AGTTGTAACCCGCGTGGGATCTATGAGTATATGAAAGAAAATCATCCAGA 1250
BSNT_05452___ 1134 ATACAACTTAATATGGAGTGTAAATCCGAGTTATACAGAAA--------- 1174
|||.|..||.||.|||||.||.|| |||
BPUM_3228___t 1251 ATATACGTTGATCTGGAGCGTGAA--------------AAAAGGGCATGA 1286
BSNT_05452___ 1175 -------TTTTCGAAGAAAAA---AATGTCCCTTATATTAACCGATTCAC 1214
||| |||.|||| .||.|.| |||||.||.||..|..|
BPUM_3228___t 1287 AGCACCGTTT---AAGGAAAAGGGCATCTAC--TATATCAATCGTCTGTC 1331
BSNT_05452___ 1215 GCTGAAGTGGCTGTTCGCCATGGCAAGGGCGGAATTTTGGGTTGTAAACA 1264
..||||.|||.|.||.||.||||||||.||.||||.||||||.||.||||
BPUM_3228___t 1332 ATTGAAATGGATTTTTGCAATGGCAAGAGCCGAATATTGGGTCGTCAACA 1381
BSNT_05452___ 1265 GCCGGCTCCCTTTATGGATACCCAAACCAAAGCACACGACATATGTGCAG 1314
||||..|.|||.|||||.|.||.||||||.||||.||.|||||..|||||
BPUM_3228___t 1382 GCCGTTTACCTCTATGGGTTCCAAAACCAGAGCATACAACATACTTGCAG 1431
BSNT_05452___ 1315 ACGTGGCACGGGACTCCGCTGAAAAGGCTTGCCGTCGATATGGAAGAAGT 1364
||.||||||||.||.|||.|.|||.|.||.||..|.||||||||.||.||
BPUM_3228___t 1432 ACATGGCACGGTACACCGTTAAAACGACTGGCGATGGATATGGACGAGGT 1481
BSNT_05452___ 1365 GCACATGCCGGGCACCAACACTGAGAAGTACAAGCAAAATTTCACTAAAG 1414
|||.|||||.||.||.|||||..||||.|||||..|.||||||||.||||
BPUM_3228___t 1482 GCATATGCCTGGAACAAACACGAAGAAATACAAAAAGAATTTCACGAAAG 1531
BSNT_05452___ 1415 AAGCATCTAAGTGGGACTATTTAATATCCCCGAATCG-GTATTCAACCGA 1463
|||||||.||.||||||||..|.|||||.||.|| || .||.||.||.||
BPUM_3228___t 1532 AAGCATCGAATTGGGACTACCTCATATCTCCCAA-CGCTTACTCGACTGA 1580
BSNT_05452___ 1464 GATTTTTGCCCGCGCTTTTCAATTTAACAAAACAATGATTGAGTCCGGAT 1513
.||.|||.|.||.||.||.||||||.|.||.||.|||||||||||.||||
BPUM_3228___t 1581 AATCTTTACACGTGCCTTCCAATTTCAAAAGACCATGATTGAGTCAGGAT 1630
BSNT_05452___ 1514 ACCCGAGGAATGATTTTCTGTATA---CAGACAACCGCCCG--GAAACGA 1558
|.|||||.|||||.||.||..||| .|.|||| .| |||||||
BPUM_3228___t 1631 ATCCGAGAAATGACTTCCTTCATAATCAAAACAA-----TGAAGAAACGA 1675
BSNT_05452___ 1559 TGAAGGCCATAAAGAAAAAAATGAATATCCCCGAAGATAAAAAGGTCATT 1608
|||..||..|.||..||||.|||||..|.||....||||||||..|.||.
BPUM_3228___t 1676 TGAGAGCACTCAAACAAAAGATGAACCTGCCACTTGATAAAAAATTGATC 1725
BSNT_05452___ 1609 TTATATGCACCGACATGGCGGGACGATCAGTTCTATAAAAAAGGAAAATA 1658
||||||||.|||||||||.|.||.|||||.||.|||||||||||..|.||
BPUM_3228___t 1726 TTATATGCTCCGACATGGAGAGATGATCAATTTTATAAAAAAGGGCAGTA 1775
BSNT_05452___ 1659 CAAATTT------GACCTTGATTTGAAT---ATGGAAAAGCTGC-----G 1694
||||||| ||.|||||||||.|| ||| |.|||||| |
BPUM_3228___t 1776 CAAATTTGATTTAGATCTTGATTTGCATGAGATG--AGAGCTGCACTTGG 1823
BSNT_05452___ 1695 AGAGGAGATCGGCGATAATTACGTCATCATTTTAAGAATGCACTATTTAG 1744
|||.|| ||| || ||||.|||.|..|.|||||||||||||
BPUM_3228___t 1824 AGATGA--------ATA--TA--TCATTATTCTGCGCATGCACTATTTAG 1861
BSNT_05452___ 1745 TCGCGGAAAACTTTGACCTTT--CACCCTACAAAGGATTCGCATATGATT 1792
|.||.||||||||||| ||| .|||.||..||||.||.||.|||||.|
BPUM_3228___t 1862 TTGCTGAAAACTTTGA--TTTAGGACCATATGAAGGCTTTGCCTATGACT 1909
BSNT_05452___ 1793 TCTCAGCA-TATGAAGATATTCGCGAACTTTATATGGTATCTGATTTGTT 1841
|||| .|| ||.|||||.|||.|.||.|||||||||.|.||||||.||.|
BPUM_3228___t 1910 TCTC-TCATTACGAAGACATTAGAGACCTTTATATGATTTCTGATCTGCT 1958
BSNT_05452___ 1842 AATTACAGATTACTCTTCAGTATTCTTTGATTTCGCAAATTTGAAACGTC 1891
.||.|||||||||||.||.||.||||||||||..|||||..|.|||||||
BPUM_3228___t 1959 CATCACAGATTACTCATCTGTGTTCTTTGATTATGCAAACCTCAAACGTC 2008
BSNT_05452___ 1892 CAATGATTTTCTTCGTTCCAGACATTGAAACCTATCGTGACAAGCTGCGC 1941
|.|||.|.||||..||.||||||||.|||||.|||||||||||||||.|.
BPUM_3228___t 2009 CGATGCTATTCTATGTGCCAGACATCGAAACATATCGTGACAAGCTGAGA 2058
BSNT_05452___ 1942 GGCTTTTATTTTGACTTTGAACGAGAAGCACCAGGTCCGTTAGTCAAAAC 1991
|||||.||.||.||||||||||.|||||||||.||.||..|.||.|||..
BPUM_3228___t 2059 GGCTTCTACTTCGACTTTGAACAAGAAGCACCTGGACCTCTTGTGAAAGA 2108
BSNT_05452___ 1992 GACTGAGGGAGTAATTGAGAAAATC-----AAG-GAAACAGAGACATCTG 2035
.||.|...|.||.||||| | ||| |||||||| |||.|.|
BPUM_3228___t 2109 AACAGCCAGCGTCATTGA------CTGGGTAAGAGAAACAGA-ACAGCCG 2151
BSNT_05452___ 2036 A-CTATCGCCTGCCAGACATT--TTTGAACCTTTTTATGAAAGGTTTTGT 2082
| ||.|....|||||| .|| ||.|.|||.||||||||.|..||.|||
BPUM_3228___t 2152 ATCTTTACTTTGCCAG--CTTCATTCGCACCGTTTTATGAGAAATTCTGT 2199
BSNT_05452___ 2083 TACCTGGAGACAGGTAACTCTTCGGAAAAAG-----TAGTGAATAGAATT 2127
|||.|.||||..||..|.|||||| ||| |..||||.|| .|.
BPUM_3228___t 2200 TACTTAGAGAGCGGGGAGTCTTCG----AAGCGGGTTGTTGAAGAG-GTG 2244
BSNT_05452___ 2128 TTT---GAGTAA 2136
||| ||||||
BPUM_3228___t 2245 TTTGAAGAGTAA 2256
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