Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_06231 and BPUM_3162

See DNA alignment / Visit BSNT_06231 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:41
# Commandline: needle
#    -asequence pep-align/BSNT_06231___yybR.1.24716.seq
#    -bsequence pep-align/BPUM_3162.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06231___yybR-BPUM_3162.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06231___yybR-BPUM_3162.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06231___yybR
# 2: BPUM_3162
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 127
# Identity:      68/127 (53.5%)
# Similarity:    86/127 (67.7%)
# Gaps:           8/127 ( 6.3%)
# Score: 353.0
# 
#
#=======================================

BSNT_06231___      1 MSGKKN-IYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRIC     49
                     ||...| :.....||||..|..||||||||::.||:..|.||:||.||:.
BPUM_3162          1 MSAPSNPVSIVNHGCPVSTTSSVIGGKWKGVILYHLTCGPKRYNELRRLL     50

BSNT_06231___     50 PSITQRMLTLQLRELEADGIVHREVYQQVPPKVEYSLTEFGRTLEPIVLQ     99
                     |.|:||:|||||||||.||:||||||::|||:||||||..|.||:||:..
BPUM_3162         51 PRISQRVLTLQLRELEQDGVVHREVYEEVPPRVEYSLTSLGDTLKPIIFA    100

BSNT_06231___    100 MKEWGES-NRDVLESYRSNGLLKDQQK    125
                     |:||||| .::.....:|..|      
BPUM_3162        101 MREWGESYGKEARPKEKSCHL------    121


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.