Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06231 and BPUM_3162
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_06231___yybR.1.24716.seq
# -bsequence dna-align/BPUM_3162.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06231___yybR-BPUM_3162.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06231___yybR-BPUM_3162.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06231___yybR
# 2: BPUM_3162
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 417
# Identity: 233/417 (55.9%)
# Similarity: 233/417 (55.9%)
# Gaps: 90/417 (21.6%)
# Score: 554.0
#
#
#=======================================
BSNT_06231___ 1 ATGAGTGGAAAAAAGAATATATACCC-----GAA----CAAAGAAGGCTG 41
|||||||.|..|...||| || |.| |||..|.|||||
BPUM_3162 1 ATGAGTGCACCATCCAAT------CCAGTCAGTATTGTCAATCATGGCTG 44
BSNT_06231___ 42 TCCAGTTGAATTTA-----CTCTAGATGTCATTGGCGGAAAGTGGAAAGG 86
|||.|| ||.| |||.|| |||.||.||.|||||.||||||||
BPUM_3162 45 TCCCGT----TTCAACCACCTCGAG-TGTAATAGGAGGAAAATGGAAAGG 89
BSNT_06231___ 87 AATTCTTTTTTATCACATGA-TAGATGGCAAGAAACGATTTAATGAGTTT 135
|.|..|..|||||||..||| |.|..|.|.| |||||||..|||||.||.
BPUM_3162 90 AGTGATCCTTTATCATTTGACTTGCGGTCCA-AAACGATACAATGAATTA 138
BSNT_06231___ 136 CGGCGAATCTGC--CCGAGTATTACTCAAAGAATGCTTACTCTTCAGCTG 183
||.||| ||.| ||.||.|||.||||..|..|.|||||.||.||..||
BPUM_3162 139 CGCCGA--CTTCTACCAAGAATTTCTCAGCGTGTTCTTACGCTGCAATTG 186
BSNT_06231___ 184 AGGGAGCTGGAAGCGGACGGCATCGTGCATCGTGAGGTTTATCAACAGGT 233
.|.|||||.|||...||.|||.|.||.||..|.||.||.|||.|..||||
BPUM_3162 187 CGTGAGCTAGAACAAGATGGCGTTGTTCACAGAGAAGTCTATGAGGAGGT 236
BSNT_06231___ 234 GCCGCCCAAGGTTGAGTACTCTCTGACGGAATTC---GGGCGA-ACGCTT 279
.||.||....|||||.||.||.||.|| ||| .||.|| |||.|.
BPUM_3162 237 CCCTCCTCGTGTTGAATATTCACTCAC----TTCTCTAGGAGATACGTTA 282
BSNT_06231___ 280 GAACCGATTGT-TTTGCAAATGAAAGAATGGGGAGAATCCAACAGAGACG 328
.||||.||..| ||.|| .|||...||||||||.||||||.|
BPUM_3162 283 AAACCTATCATCTTCGC-TATGCGTGAATGGGGCGAATCCTA-------- 323
BSNT_06231___ 329 TGCTGGAATCTTATCGTTCGAACGGCTTACTGAAG---GATCAGCAGAAA 375
||||| || |||| |..||..|||||
BPUM_3162 324 ---TGGAA------------AA---------GAAGCGCGCCCAAAAGAAA 349
BSNT_06231___ 376 --------------TAG 378
|||
BPUM_3162 350 AAAGCTGCCATCTCTAG 366
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