Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05315 and BPUM_3129

See DNA alignment / Visit BSNT_05315 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence pep-align/BSNT_05315___yvpB.1.24716.seq
#    -bsequence pep-align/BPUM_3129.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05315___yvpB-BPUM_3129.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05315___yvpB-BPUM_3129.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05315___yvpB
# 2: BPUM_3129
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 270
# Identity:     149/270 (55.2%)
# Similarity:   198/270 (73.3%)
# Gaps:          26/270 ( 9.6%)
# Score: 777.0
# 
#
#=======================================

BSNT_05315___      1 MKTLRTLCVLMILSGVIFFGLKIDAKDIDIPFLNSLKKVVS--------D     42
                     ||.::||.:.::.:.:::||.      |.:..::.:||..|        :
BPUM_3129          1 MKFIQTLILTLLCACLVYFGF------IFVTQIDQVKKTASPHEAAKEKE     44

BSNT_05315___     43 SDTDSAA----NSKK------ELKGSAKPLDVILYNQMDAPRLYNGCEVT     82
                     :||..||    ::||      .||||.|.:|||||||||||:||||||||
BPUM_3129         45 NDTALAAEETRSTKKTDASYSSLKGSKKAMDVILYNQMDAPKLYNGCEVT     94

BSNT_05315___     83 SLAMVLNYAGYD-VTKNTLANQIATVPLTYSSGLKGDPNDGFVGDMANGP    131
                     ||||:|:|:||: |||:.|||:|..|||.|.:||||||.|||||||.|||
BPUM_3129         95 SLAMLLHYSGYEQVTKDALANEIKRVPLNYENGLKGDPRDGFVGDMENGP    144

BSNT_05315___    132 GLGVYHRPIYQLAKTYAGDKVSDLTGKSI-SAVYQQLEKGNPVWVITTAN    180
                     ||||||.|||||||.|||.:|.||:||.: .|:||.||||.|||||||:.
BPUM_3129        145 GLGVYHEPIYQLAKKYAGAQVVDLSGKPVKKAIYQSLEKGYPVWVITTST    194

BSNT_05315___    181 FTPVDNMQTWKTPNGTIEITYSEHSVAVTGYDDKYVYLNDPYGYKNRKTD    230
                     |..:||::||.||||.|:::::.|||.:||||.::||||:|||.||:|.|
BPUM_3129        195 FDKIDNIETWNTPNGKIDVSFNMHSVVITGYDKEHVYLNNPYGEKNQKVD    244

BSNT_05315___    231 RTSFEKAWKQMGSQAVVIQK    250
                     |..||.:|:||||||::|:.
BPUM_3129        245 RDQFEDSWEQMGSQAIIIKA    264


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