Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05315 and BPUM_3129

See Amino acid alignment / Visit BSNT_05315 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_05315___yvpB.1.24716.seq
#    -bsequence dna-align/BPUM_3129.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05315___yvpB-BPUM_3129.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05315___yvpB-BPUM_3129.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05315___yvpB
# 2: BPUM_3129
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 869
# Identity:     524/869 (60.3%)
# Similarity:   524/869 (60.3%)
# Gaps:         190/869 (21.9%)
# Score: 1430.0
# 
#
#=======================================

BSNT_05315___      1 -----------------ATGAAAACACTGCGAACTCTATGTGT-------     26
                                      ||.||     |.|.||||.|.| |||       
BPUM_3129          1 GTGAAGTTCATCCAGACATTAA-----TCCTAACTTTGT-TGTGCGCATG     44

BSNT_05315___     27 CCTGATGATTCTTTCAGGCGTTATTTTTTTCG-GACTTA-AAATAGA---     71
                     |||  ||.||.|||| |||.|||   |.|||| |||  | ||||.||   
BPUM_3129         45 CCT--TGTTTATTTC-GGCTTTA---TATTCGTGAC--ACAAATCGACCA     86

BSNT_05315___     72 --TGCAAAAGATATAGATA--TTC------CTTTTTTGAA-CAGCCTTA-    109
                       | |||||     |||.|  |||      |      ||| |||||..| 
BPUM_3129         87 AGT-CAAAA-----AGACAGCTTCACCACAC------GAAGCAGCCAAAG    124

BSNT_05315___    110 AAAAAGTGGTTTCTGATAGCGATACAG-ACT--CAGCTG-----------    145
                     |||||         ||.|.||||||.| |||  ||||||           
BPUM_3129        125 AAAAA---------GAAAACGATACGGCACTTGCAGCTGAAGAAACACGA    165

BSNT_05315___    146 ----CGAATAGCAAAAAGGAGC--------------TGAAGGGAAGCGCA    177
                         ||||.|  |||.||..||              |.||.|||||...|
BPUM_3129        166 TCAACGAAAA--AAACAGACGCCTCTTATTCTTCTTTAAAAGGAAGTAAA    213

BSNT_05315___    178 AAACCGCTGGATGTCATCCTTTACAATCAAATGGACGCACCCCGGCTCTA    227
                     |||.|..||||.||||||||.||||||||||||||.||.||...|||.||
BPUM_3129        214 AAAGCCATGGACGTCATCCTCTACAATCAAATGGATGCCCCAAAGCTTTA    263

BSNT_05315___    228 TAACGGCTGTGAAGTAACAAGCCTTGCGATGGTGCTGAATTAC-GCGGGA    276
                     |||.||.||.|||||.||||||.|.||||||.|.||..||||| || ||.
BPUM_3129        264 TAATGGATGCGAAGTCACAAGCTTAGCGATGCTTCTCCATTACAGC-GGC    312

BSNT_05315___    277 TACG---ACGTGACAAAAAACACTCTGGCAAATCAGATTGCCACA---GT    320
                     ||.|   |.|||||.|||.||.|..||||||||.|.||   ||.|   ||
BPUM_3129        313 TATGAGCAAGTGACGAAAGACGCATTGGCAAATGAAAT---CAAACGTGT    359

BSNT_05315___    321 GCC-------TTTG-ACATACAGCAGCGGATTAAAGGGTGATCCGAATGA    362
                     .||       |.|| |.||        ||.|||||.||.||.||...|||
BPUM_3129        360 TCCGCTCAATTATGAAAAT--------GGTTTAAAAGGAGACCCACGTGA    401

BSNT_05315___    363 CGGATTTGTCGGGGATATGGCGAATGGCCCTGGTCTCGGTGTCTACCATC    412
                     |||.|||||.||.|||||||.||||||.||.||.||.|||||.||||||.
BPUM_3129        402 CGGGTTTGTAGGAGATATGGAGAATGGACCAGGCCTTGGTGTATACCATG    451

BSNT_05315___    413 GACCGATCTATCAGCTGGCGAAAACCTATGCGGGAGACAAAGT-GTCTGA    461
                     .|||.||.||||||||.|||||||..|||||.||.|...|||| ||| ||
BPUM_3129        452 AACCTATTTATCAGCTTGCGAAAAAATATGCAGGCGCTCAAGTCGTC-GA    500

BSNT_05315___    462 TCTGACTGGAAAAAGTATTTCC----------GCTGTTTATC-AGCAGCT    500
                     |.|.|..||||||       ||          ||..|||||| |.|| ||
BPUM_3129        501 TTTAAGCGGAAAA-------CCTGTCAAAAAGGCCATTTATCAATCA-CT    542

BSNT_05315___    501 TGAAAAAGGCAATCCAGTTTGGGTTATTACGACAGCCAACTTTACGCC--    548
                     |||||||||..||||.||||||||.|||||.|||.|||.||||  |.|  
BPUM_3129        543 TGAAAAAGGGTATCCTGTTTGGGTGATTACCACATCCACCTTT--GACAA    590

BSNT_05315___    549 AGTTGACAACATGCAGACATGGAAAACGCCAAACGGAACGATAGAAAT-T    597
                     |.|.||.|||||..|.||||||||.||.|||||.||.|      |||| .
BPUM_3129        591 AATAGATAACATCGAAACATGGAATACACCAAATGGCA------AAATCG    634

BSNT_05315___    598 ACGTACAGC--GAA----CACAGCGTCGCCGTTACGGGATATGATGATAA    641
                     |.||| |||  .||    ||.|||||.|.|.|.||.||.|||||..|..|
BPUM_3129        635 ATGTA-AGCTTTAATATGCATAGCGTGGTCATCACAGGCTATGACAAGGA    683

BSNT_05315___    642 ATATGTGTATCTCAATGATCCGTATGGCTATAA-AAACAGAAAAACCGAT    690
                     ..||||.||..|.|||.|.||.|||||..|.|| ||.|| ||||..||||
BPUM_3129        684 GCATGTCTACTTAAATAACCCATATGGAGAAAAGAATCA-AAAAGTCGAT    732

BSNT_05315___    691 --AGAACAAGCTTTGAAAAAGCGTGGAAACAAATGGGCAGCCAGGCCGTG    738
                       .||.|||  ||||||.|..|.|||.||||.||||||||.||.||   |
BPUM_3129        733 CGCGATCAA--TTTGAAGATTCTTGGGAACAGATGGGCAGTCAAGC---G    777

BSNT_05315___    739 GTTATTCA--AAAGTAA--    753
                     .||| |||  ||||.|.  
BPUM_3129        778 ATTA-TCATTAAAGCATAG    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05315 and BPUM_3129

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
