Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05289 and BPUM_3111

See DNA alignment / Visit BSNT_05289 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence pep-align/BSNT_05289___yvcN.1.24716.seq
#    -bsequence pep-align/BPUM_3111.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05289___yvcN-BPUM_3111.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05289___yvcN-BPUM_3111.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05289___yvcN
# 2: BPUM_3111
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 254
# Identity:     126/254 (49.6%)
# Similarity:   174/254 (68.5%)
# Gaps:           9/254 ( 3.5%)
# Score: 645.5
# 
#
#=======================================

BSNT_05289___      1 --MSDFLKDCFQKIGWEKDHVSFGDLPLFLKAMAYRFPFENRAVLAKENY     48
                       .|.||    ||||:|...::|.|||:.||.|||.||||||:||.|::|
BPUM_3111          1 MIQSAFL----QKIGYEGQSITFNDLPVLLKKMAYTFPFENRSVLKKQSY     46

BSNT_05289___     49 KITKEELWRRLLKDQHGGLCYDLNGFLYFVLREAGFHVKLIRGTVYAGDQ     98
                     .:.:|.|.:.||:...||||||||..||:||:||||.|:|::||||..:.
BPUM_3111         47 ALNQEGLNQHLLEGNRGGLCYDLNPLLYYVLKEAGFAVQLVQGTVYNKEA     96

BSNT_05289___     99 EGWALEGTHAAVWLSAENGDYLVDIGFGINLALQPIPLSGETVQSPVGSF    148
                     ..||::|||.|:.|:..|..||:|.|||:||.|||:|.:.|.::.....|
BPUM_3111         97 GAWAIDGTHVAMTLNHHNERYLIDAGFGVNLPLQPVPFTEEWIKGASIRF    146

BSNT_05289___    149 RIKREETEKGSHVLLMDKGEGWQIGYAFTLEESDLGDLDNMKDIIHSHEK    198
                     |:|.||||||:|:|.:|:|||.:|||||||:|.....|..|:..|:.:|.
BPUM_3111        147 RVKEEETEKGTHLLQLDRGEGAEIGYAFTLQEVSEPTLVQMRQEIYENEA    196

BSNT_05289___    199 SPFNKSPLASKLTPSGRMVMSERHFTIHENGSDIQKSDIGPSEFEEKLNT    248
                     |||||.||||||||:||::::|.|.|.||: .::.|..: |..|:|.:.|
BPUM_3111        197 SPFNKRPLASKLTPTGRVIVTEEHVTTHEH-EEVSKKPL-PLPFDEYVKT    244

BSNT_05289___    249 HFL-    251
                     ... 
BPUM_3111        245 LLPK    248


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