Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05289 and BPUM_3111
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_05289___yvcN.1.24716.seq
# -bsequence dna-align/BPUM_3111.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05289___yvcN-BPUM_3111.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05289___yvcN-BPUM_3111.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05289___yvcN
# 2: BPUM_3111
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 835
# Identity: 495/835 (59.3%)
# Similarity: 495/835 (59.3%)
# Gaps: 167/835 (20.0%)
# Score: 1150.5
#
#
#=======================================
BSNT_05289___ 1 ATGAGTGACTTTCTAAAAGACTGCTTT----CAGAAAATCGGCTGGGAGA 46
||||.|.|.| |.||||| |||||.|||||.| |..
BPUM_3111 1 ATGATTCAAT----------CAGCTTTTTTACAGAAGATCGGAT---ATG 37
BSNT_05289___ 47 AAGATCATG----TCAGCTTCGGCGATCTT-CCCCTTTTTCTCAAAGCAA 91
|||..|| | |||.|||....|| ||| ||..|.||..|.|||..||
BPUM_3111 38 AAGGCCA-GTCGATCACCTTTAATGA-CTTACCTGTATTATTAAAAAAAA 85
BSNT_05289___ 92 TGGC--ATACCGTTTTCCATTCGAAAACCGTGCCGTACTTGCAAAAGAGA 139
|||| ||||| ||||||||.|||||..|..|.||.|| .||||.|.|
BPUM_3111 86 TGGCCTATACC--TTTCCATTTGAAAATAGATCTGTTCT--GAAAAAACA 131
BSNT_05289___ 140 ATTATAAG------ATCACAAAAGAAGAGCT--ATGGCGACGTCTGCTCA 181
||..||.| ||| ||||||.|.| || |..|.|||.||..
BPUM_3111 132 ATCCTATGCTTTGAATC----AAGAAGGGTTGAAT--CAGCATCTTCTTG 175
BSNT_05289___ 182 AAG--ATCAGCACGGCGGCCTATGCTACGATTTAAATGGTTTTCTTTATT 229
||| |.||| .||.||.||.||.||.|||.|.|||..|.||.|.||||
BPUM_3111 176 AAGGAAACAG--AGGAGGTCTTTGTTATGATCTCAATCCTCTTTTATATT 223
BSNT_05289___ 230 TTGTCTTGCGTGAGGCTGGGTTTCATGTGAAGCTCATTCGAGGAACGGTT 279
.|||.||....|||||.||.|||..|||..|||||.|||.|||.||.||.
BPUM_3111 224 ATGTGTTAAAAGAGGCAGGATTTGCTGTACAGCTCGTTCAAGGGACTGTG 273
BSNT_05289___ 280 TAT-GCAGGCGATCAAGAGGGATGGGCACTAGAAGGGACGCATGCTGCTG 328
||| .||.|..|.||.|| |.|||||||.|.||.||.||.||||..||
BPUM_3111 274 TATAACAAGGAAGCAGGA-GCATGGGCAATTGATGGTACACATGTAGC-- 320
BSNT_05289___ 329 TATG--GCTG--TCTGCGGAA--AACGGCGATTACCTCGTTGATATCGGC 372
.||| |.|| ||..|..|| ||||| ||.||..|||||...||.
BPUM_3111 321 CATGACGTTGAATCATCACAACGAACGG----TATCTGATTGATGCGGGT 366
BSNT_05289___ 373 TTCG----GCATCAACCTGGCGCTCCAGCCGATACCGCTTTCCGGAGAAA 418
||.| |.||..|||| ||||||||..|||| .|||.||||..||
BPUM_3111 367 TTTGGTGTGAATTTACCT----CTCCAGCCTGTACC-TTTTACGGAAGAA 411
BSNT_05289___ 419 CGGTACA-------GTCACCAGTCGGGTCATTCCGAATCAAAAGA-GAAG 460
.||..|| || |.|.|||| ||.|||.|| ||||| ||.|
BPUM_3111 412 TGGATCAAAGGAGCGT--CTATTCGG----TTTCGAGTC-AAAGAGGAGG 454
BSNT_05289___ 461 AGACAGAAAAGGGCAGCCATGTTCTGC----TGATGGACAAGGGAGAAGG 506
|.||.|||||.||.|..|||.||||.| .|||.|| ||||||||
BPUM_3111 455 AAACCGAAAAAGGGACACATCTTCTCCAATTAGATAGA----GGAGAAGG 500
BSNT_05289___ 507 CTGGC--AAATCGGGTACGCCTTTACTCTTG-AAGAGAGTGATCTCGGTG 553
| || ||||.||.|||||.||.|| .||| ||||| |||| |.|
BPUM_3111 501 C--GCTGAAATAGGCTACGCATTCAC-ATTGCAAGAG-GTGA-----GCG 541
BSNT_05289___ 554 A-TTTAGAT------AACATGA---AGGACATCATTCACTCTCATGAAAA 593
| ..||.|| || |||| ||||.|| |.|||||||
BPUM_3111 542 AGCCTACATTGGTCCAA-ATGAGACAGGAGAT---------TTATGAAAA 581
BSNT_05289___ 594 ------ATCTCCTTTTAACAAATCCCCGCTTGCCTCAAAGCTGACGCCGA 637
.|||||||||||||||...||||||||.||||||||.||.||.|
BPUM_3111 582 TGAAGCCTCTCCTTTTAACAAAAGACCGCTTGCTTCAAAGCTTACACCAA 631
BSNT_05289___ 638 GCGGAAGGATG-GTCA-TGTCA--GAGCGCCATTTTACGATTCATGAAAA 683
.||||.| |||| ||||| |||...|||.|.||.|..||||||.|
BPUM_3111 632 ----CAGGACGTGTCATTGTCACGGAGGAACATGTCACCACACATGAACA 677
BSNT_05289___ 684 CG--GCAGTGACATTCAAAAAA---GTGACATTGGCCCTTCAGAATTTGA 728
|| |.|||| ||.||||| |..|| |||||| ..|||||
BPUM_3111 678 CGAAGAAGTG----TCGAAAAAACCGCTAC-----CCCTTC--CTTTTGA 716
BSNT_05289___ 729 AGAGAAAT-TAAATACTCATTTTTTG--TAA---- 756
.|| |.|| |.||.||.| |.||| .||
BPUM_3111 717 CGA-ATATGTGAAAACCC---TGTTGCCGAAGTAG 747
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