Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_06192 and BPUM_3061
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence pep-align/BSNT_06192___rocR.1.24716.seq
# -bsequence pep-align/BPUM_3061.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_06192___rocR-BPUM_3061.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06192___rocR-BPUM_3061.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06192___rocR
# 2: BPUM_3061
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 488
# Identity: 290/488 (59.4%)
# Similarity: 355/488 (72.7%)
# Gaps: 35/488 ( 7.2%)
# Score: 1452.0
#
#
#=======================================
BSNT_06192___ 1 MVKDSEFLTL-----VFQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDM 45
|.||.....| :::.:||.||||:|.:||:|:|:|||.|||:||.:
BPUM_3061 1 MKKDLHTAKLENEIDLYKQMLDLIDVGVHAIDENGHTVVYNKKMMEIESL 50
BSNT_06192___ 46 EKHDVLNKNLMDVFMFSKQQDSTLVQALQEGKTIKNVKQSYFNNKGQEIT 95
::.|||:||::|.|.|..:..|||||||:.||...:.||:|.|..|:|||
BPUM_3061 51 KRSDVLHKNVLDFFAFQDEMHSTLVQALRTGKQTVHAKQTYHNYNGKEIT 100
BSNT_06192___ 96 TINHTYPIVQDGKIRGAVEIAKDVTKLERLIRENMNKKGSTTYTFDSILG 145
|||||||:|:||.|:|||||:.|||||||||..||.|||||.:||:||:|
BPUM_3061 101 TINHTYPLVRDGLIQGAVEISNDVTKLERLIHHNMKKKGSTRFTFESIIG 150
BSNT_06192___ 146 TSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPF 195
.|||..:|||:|||||||||.||:.||||||||||||||||||.||.|||
BPUM_3061 151 QSPAFLEVIEHAKRATRTSSYVLIVGETGTGKELFAQSIHNGSSRSSGPF 200
BSNT_06192___ 196 ISQNCAALPDSLVESILFGTKKGAFTGAVDQPGLFEQAHGGTLLLDEINS 245
|:||||||||:|:||:||||:|||||||.|||||||||.|||||||||||
BPUM_3061 201 ITQNCAALPDNLIESLLFGTQKGAFTGAADQPGLFEQAQGGTLLLDEINS 250
BSNT_06192___ 246 LNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERM 295
||..|||||||.|||:::||:||||:..:|||:||.|||||:||||..||
BPUM_3061 251 LNPHLQAKLLRVLQEKRVRRLGSTKEIAVDVRVIANMNEDPVDAIASGRM 300
BSNT_06192___ 296 RKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDD 345
||||:|||.:|||.||||.||||||....:.||||.|.||||.|:...::
BPUM_3061 301 RKDLFYRLGIVTLFIPPLSERKEDIPTFVNHFIQKYNELFQMKVKAADEE 350
BSNT_06192___ 346 VKQFFLSYDWPGNIRELEHMIEGAMNFMTDEQTITASHLPYQYRMK---- 391
|...|.:||||||:|||||:||..||.|.||..::..||||.:|.|
BPUM_3061 351 VLALFKAYDWPGNVRELEHVIEAGMNMMMDEDELSMHHLPYHFRFKQMEG 400
BSNT_06192___ 392 IKPADI------------------PEPETPRHQPAADLKEKMESFEKYVI 423
..||.: ||..| |.:.:||.|||..|
BPUM_3061 401 RPPAQLQTNSLQQTVAADTFVYTSPEQTT-------DFQTQMERFEKQYI 443
BSNT_06192___ 424 ENVLRKHGHNISKAAQELGISRQSLQYRLKKFSHSSNE 461
.:.|.|...|||:.|:.||:||||||||:||. |.|.:
BPUM_3061 444 VHYLEKMDDNISQTAKLLGMSRQSLQYRMKKL-HISRQ 480
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