Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06192 and BPUM_3061
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_06192___rocR.1.24716.seq
# -bsequence dna-align/BPUM_3061.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06192___rocR-BPUM_3061.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06192___rocR-BPUM_3061.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06192___rocR
# 2: BPUM_3061
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 966/1557 (62.0%)
# Similarity: 966/1557 (62.0%)
# Gaps: 285/1557 (18.3%)
# Score: 2722.5
#
#
#=======================================
BSNT_06192___ 1 GTGGTCAAAGA-CAGCGAATTCC--------------TCACATTGGTTTT 35
|||...||||| |.|| ||.|| |.|.||||.|||.
BPUM_3061 1 GTGAAAAAAGATCTGC--ATACCGCAAAGCTTGAAAATGAGATTGATTTA 48
BSNT_06192___ 36 T-----CAGA-GCATTTTAGATGAAATCGATGTTGG----CCTGCACGTG 75
| ||.| || |.|||..|||.|||||.|| |.||||
BPUM_3061 49 TATAAACAAATGC----TCGATTTAATTGATGTCGGGGTTCATGCA---- 90
BSNT_06192___ 76 GTAGACGAGCATGGAAACACAATCGTTTATAACAATAAAATGATGCAGAT 125
.|.||.|||.|||||.|.||..|.||||||||.||.|||||||||.||||
BPUM_3061 91 ATTGATGAGAATGGACATACGGTTGTTTATAATAAAAAAATGATGGAGAT 140
BSNT_06192___ 126 TGAAGATATGGAGAAGCATGACGTCTTGAATAAAAAC---CTGATGGATG 172
||| |||| |.||||| ||||||
BPUM_3061 141 TGA-------------------GTCT----TTAAAACGCTCTGATG---- 163
BSNT_06192___ 173 TGTTT----------ATGT----------------TTTCAAAGCAGCA-- 194
|| |||| |||| |||..|.|
BPUM_3061 164 ---TTCTCCATAAAAATGTACTCGATTTCTTCGCCTTTC-AAGATGAAAT 209
BSNT_06192___ 195 GGACAGCACACTGGTACAGGCTCTTCAGGAAGGCAAGACGATTAAAAACG 244
|.||||.|||||.||.||.||.||.| |.|..|.||.|| |||.||
BPUM_3061 210 GCACAGTACACTTGTCCAAGCGCTGC-GTACCGGAAAAC-----AAACCG 253
BSNT_06192___ 245 T------CAAACAGAGCTATTTCAATAATAAAGGCCAGGAAATTACGACG 288
| |||.||||..|||...|||.|.||.||..|.||||||||.|||
BPUM_3061 254 TACATGCCAAGCAGACGTATCATAATTACAATGGAAAAGAAATTACAACG 303
BSNT_06192___ 289 ATCAATCATACATATCCCATCGTCCAAGACGG-CAAAATCAGGGGCGCTG 337
||.||.|||||||||||..||||.|.|||||| |..|.|||.||| ||||
BPUM_3061 304 ATTAACCATACATATCCGCTCGTTCGAGACGGTCTCATTCAAGGG-GCTG 352
BSNT_06192___ 338 TTGAAATTGCCAAGGATGTGACAAAGCTTGAACGGCTGA-TCAGGGAGAA 386
||||||||.|.||.|||||.||.|||||||||||||||| ||| ..|.||
BPUM_3061 353 TTGAAATTTCGAATGATGTCACCAAGCTTGAACGGCTGATTCA-TCACAA 401
BSNT_06192___ 387 TATGAACAAAAAAGGCAGCACAACCTATACGTTTGA---CAGTATTCTCG 433
||||||.||||||||.|||||...||.|||.||.|| ||.||||
BPUM_3061 402 TATGAAGAAAAAAGGAAGCACTCGCTTTACCTTCGAATCCATTATT---- 447
BSNT_06192___ 434 GCAC-CAGTCCGGCCATTCAAGACGTCATCGAAAACGCCAAGCGGGCAAC 482
|.|| .||.||.||..||..|||.||.||.||..|.||.||.||.||.||
BPUM_3061 448 GGACAAAGCCCTGCATTTTTAGAGGTGATTGAGCATGCGAAACGAGCGAC 497
BSNT_06192___ 483 CCGTACGTCATCATCTGTCCTTCTCGCAGGCGAAACCGGCACGGGAAAAG 532
.||.||.||.||.|.|||.||..|.|..||||||||.||.||.||.||||
BPUM_3061 498 ACGCACCTCTTCTTATGTGCTCATTGTTGGCGAAACAGGGACTGGGAAAG 547
BSNT_06192___ 533 AACTGTTCGCGCAAAGTATCCATAATGGAAG----CGATCGTTCTGGCGG 578
|||||||.||.|||||.||.|||||.||.|| ||.|| .||| ||
BPUM_3061 548 AACTGTTTGCTCAAAGCATTCATAACGGCAGCAGCCGGTC-ATCT---GG 593
BSNT_06192___ 579 CCCGTTTATTTCGCAAAACTGTGCGGCACTGCCAGACAGCCTTGTCGAAA 628
.||.||||||.|.|||||.||||||||||||||.||.|..||..|.||||
BPUM_3061 594 ACCATTTATTACCCAAAATTGTGCGGCACTGCCTGATAATCTGATTGAAA 643
BSNT_06192___ 629 GCATTTTGTTTGGGACGAAAAAAGGCGCGTTTACCGGCGCTGTCGACCAG 678
||.|..|.|||||.||..|||||||.||.|||||.||.||.|..||.|||
BPUM_3061 644 GCCTGCTTTTTGGTACACAAAAAGGAGCTTTTACGGGAGCAGCTGATCAG 693
BSNT_06192___ 679 CCCGGCCTGTTTGAACAAGCCCATGGCGGCACACTGCTGTTAGATGAAAT 728
||.|||.|.|||||.||.||.||.||.||.||..||||.||||||||.||
BPUM_3061 694 CCTGGCTTATTTGAGCAGGCGCAAGGAGGAACCTTGCTTTTAGATGAGAT 743
BSNT_06192___ 729 CAACTCGCTAAAT-CTCAGCCTTCAGGCGAAGCTGCTGCGCGCCCTTCAA 777
||||||..||||| |||| .|||||.||.||.||.|||||||.|.|.||.
BPUM_3061 744 CAACTCATTAAATCCTCA-TCTTCAAGCAAAACTACTGCGCGTCTTACAG 792
BSNT_06192___ 778 GAACGGAAA------ATCAGGC---GCATCGGTTCAACAAAGGATA-CAC 817
|| |||| |..|||| |||.| ||||||||.| |.|
BPUM_3061 793 GA---GAAACGCGTGAGAAGGCTTGGCAGC------ACAAAGGAAATCGC 833
BSNT_06192___ 818 CGATTGACGTACGTATTATTGCCACGATGAATGAAGACCCAATTGATGCA 867
.| ||||.|||.|..|.|||||||..|||||.||.|||||..|.|||||.
BPUM_3061 834 TG-TTGATGTAAGAGTGATTGCCAATATGAACGAGGACCCTGTGGATGCC 882
BSNT_06192___ 868 ATTGCAGGCGAACGAATGCGGAAGGACTTGTATTATAGGCTGAGTGTCGT 917
||.|||.|.|.|||.|||||.||.||.||.|.||||.|.||..||.|.||
BPUM_3061 883 ATCGCAAGTGGACGCATGCGTAAAGATTTATTTTATCGTCTCGGTATTGT 932
BSNT_06192___ 918 CACACTGA-TCATCCCGCCGCTTCGGGAACGAAAAGAAGACATCTTGCTT 966
||| ||.| |.||.|||||||||...|||||||||||.|||| ||.||.
BPUM_3061 933 CAC-CTTATTTATTCCGCCGCTTTCTGAACGAAAAGAGGACA--TTCCTA 979
BSNT_06192___ 967 C--TCGCG--TCGGAGTTCATCCAGAAAAACAACCATCTGTTCCAAATGA 1012
| |.|.| || |.||.||.||.|||.|.||..|.|||||.|||||||
BPUM_3061 980 CGTTTGTGAATC--ATTTTATTCAAAAATATAATGAGCTGTTTCAAATGA 1027
BSNT_06192___ 1013 ATGTTGAACACATCAGC-GATGACGTGAAGCAATTTTTCCTTT------C 1055
| |.|||| ..|||| |||||.| ||..|.||..||||| |
BPUM_3061 1028 A-GGTGAA---GGCAGCTGATGAAG---AGGTACTTGCCCTTTTTAAGGC 1070
BSNT_06192___ 1056 TTATGACTGGCCGGGAAATATTCGCGAGCTTGAGCATATGATCGAAGGC- 1104
.|||||.|||||.||.|||.|..|.||.||.||.|||.||||.| ||||
BPUM_3061 1071 GTATGATTGGCCAGGCAATGTAAGAGAACTGGAACATGTGATTG-AGGCG 1119
BSNT_06192___ 1105 GCAATGAATTTCATGACGGACGAGCAAACG-ATTACG---GCTTCCCATC 1150
|..||||||.|.||||.|||.|| |.||| ||||.| ||.| ||.|
BPUM_3061 1120 GGGATGAATATGATGATGGATGA--AGACGAATTAAGTATGCAT--CACC 1165
BSNT_06192___ 1151 TGCCCTATCAATACCGCAT----GAAAAT-CAAGCCGGCTGACATCC--- 1192
|.||||||||.|..|| || |.|||| .|| |||.|.|.|||
BPUM_3061 1166 TTCCCTATCATTTTCG-ATTTAAGCAAATGGAA---GGCCGTCCTCCTGC 1211
BSNT_06192___ 1193 -------CAGA----------GCCGGAAACACCAA------GACACC--- 1216
||.| ||.|.|||| |..| ||||||
BPUM_3061 1212 GCAATTGCAAACTAATTCTTTGCAGCAAAC-CGTAGCTGCTGACACCTTT 1260
BSNT_06192___ 1217 ------AGCCAGCCGCGGACTTAAAAG----------AAA---AAATGGA 1247
| |.||||..|.|| |||.| ||| |||||||
BPUM_3061 1261 GTCTATA-CAAGCCCTGAAC--AAACGACTGATTTTCAAACCCAAATGGA 1307
BSNT_06192___ 1248 AAGCTTCGAAAAATATGTGATAGAGAACGT--GTTA---AGAAAACACGG 1292
|.|.|||||||||.| |.|.|.||| .||| ||||||.|.||
BPUM_3061 1308 ACGATTCGAAAAACA------ATACATCGTCCATTACTTAGAAAAAATGG 1351
BSNT_06192___ 1293 -CCATAACATCTCGAAAG-CTGCTCAGGAGCTT----GGCATCAGCAGAC 1336
|.||||.||.|| |.|| |||||.|| || |||||.|||||.|
BPUM_3061 1352 ACGATAATATTTC-ACAGACTGCTAAG----TTATTGGGCATGAGCAGGC 1396
BSNT_06192___ 1337 AAAGCCTCCAATATCGGCTGAAGAA-------ATTTTCTCACTCGTCTAA 1379
||||.||.||||||||..||||.|| |||| ||||||
BPUM_3061 1397 AAAGTCTGCAATATCGAATGAAAAAGCTACATATTT-----CTCGTC--- 1438
BSNT_06192___ 1380 CGAATAA 1386
|||||
BPUM_3061 1439 --AATAA 1443
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