Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04938 and BPUM_2979
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence pep-align/BSNT_04938___yvrA.1.24716.seq
# -bsequence pep-align/BPUM_2979.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04938___yvrA-BPUM_2979.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04938___yvrA-BPUM_2979.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: BPUM_2979
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 447
# Identity: 188/447 (42.1%)
# Similarity: 261/447 (58.4%)
# Gaps: 24/447 ( 5.4%)
# Score: 829.5
#
#
#=======================================
BSNT_04938___ 1 MMKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGT 50
|::.:.:.||||:..:|..:||.|::||||||||||||||:|||.:::|.
BPUM_2979 1 MIQVKEVKGGYGEKEVIRGISLEVKQGEFLGILGPNGSGKSTLLKMISGL 50
BSNT_04938___ 51 LPAKEGRVYLAGKLLADYKPKELAQIMAVLPQKTDQAFTFTVEETVAFGR 100
|....|.|.|:|:|:..|:||.|||.||||||||||||:||||||:.|||
BPUM_2979 51 LEPDSGEVRLSGQLVKSYRPKALAQKMAVLPQKTDQAFSFTVEETIQFGR 100
BSNT_04938___ 101 YPFQTGLFRQQTEKDEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLA 150
||:|.|..:..|::|..:|.:.|||||||.|..:.|.|||||||||||||
BPUM_2979 101 YPYQKGWLQSVTQEDVQVVSKVMEQTGVAQFKNQSIHELSGGEQQRVYLA 150
BSNT_04938___ 151 QALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLN 200
|||||||..|.|||||:|||||||||||||||..|..|.|..:.||||:|
BPUM_2979 151 QALAQQPDYLLLDEPTSFLDLAYQKDLLDLIKEETTSSRLTVIGVFHDVN 200
BSNT_04938___ 201 TASLYCDELMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDVTALVHQSSPK 250
.||||||.|:.:..|.......|.:.:|.:.|..||.|:||.|.|.....
BPUM_2979 201 IASLYCDRLLLLDEGKTDMLGLPHHVLTTERINRVYKTNVTPLQHPFRAN 250
BSNT_04938___ 251 PMIVIQPEKDSVKQQSIPFEALLQAGRDDILLQTEIPLRTLSSTPIGAGF 300
|.::::|...|........:.....|.:.:......|||.|||.....||
BPUM_2979 251 PQLIVEPAASSKASIVNIMDGWRTYGSEGMTFSVNQPLRILSSHKKNGGF 300
BSNT_04938___ 301 SWSRTL--IHKRLPDQPDPIEGLTACLSESGFQLQETCAMASSERLDHFV 348
.|.|:: ..|.|.:|.:|.|.: ...|.|..|.|..|..:.: |..:
BPUM_2979 301 FWKRSIGTGSKMLHEQLEPTEDM--LFFEKGNGLAEYAAEDAED--DMIL 346
BSNT_04938___ 349 YRTYEDGELSVFICVQTGFSIWILINGYAADQFFIKALMAAEAERTKVLG 398
|...:..||::::.::...| :| ||.|...:.:...:.|.:...
BPUM_2979 347 YGMLQQEELTIWLILKRSLS-----DG-AAVQLMGQLMYIMKQETSYPF- 389
BSNT_04938___ 399 DGRGTGDILIAATQTQQSEN--IEQRLNQLIKKGTAECIKEAAELFE 443
..:.|||:.||::|: :.:||.|.: :|....:|...:
BPUM_2979 390 -----HHLCIAASNTQETEDDLLRERLGQKM-QGLLHTLKVIQK--- 427
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