Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04938 and BPUM_2979
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_04938___yvrA.1.24716.seq
# -bsequence dna-align/BPUM_2979.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04938___yvrA-BPUM_2979.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04938___yvrA-BPUM_2979.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: BPUM_2979
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1578
# Identity: 811/1578 (51.4%)
# Similarity: 811/1578 (51.4%)
# Gaps: 540/1578 (34.2%)
# Score: 1943.0
#
#
#=======================================
BSNT_04938___ 1 ATGA------TGAAGGCAGAAGGGCTGTC--GGGAGGATACGGCGACAGC 42
|||| |||| |||| ||| .||.|||||.||.||
BPUM_2979 1 ATGATTCAAGTGAA---AGAA-----GTCAAAGGTGGATATGGAGA---- 38
BSNT_04938___ 43 CGCCTAATTAACAATGTCAGCTTAACCGTGG---------AGAAG----- 78
.||..|.|||| || ||||| .||||
BPUM_2979 39 --------GAAAGAGGTCA---TA--CGTGGCATCAGTCTTGAAGTAAAA 75
BSNT_04938___ 79 ---GGAGAATTTCTCGGAATTCTCGGCCCTAATGGAAGCGGAAAAACCAC 125
||||||||||||||.|||||.||.||.|||||||||||.||..|.||
BPUM_2979 76 CAAGGAGAATTTCTCGGTATTCTTGGTCCAAATGGAAGCGGGAAGTCGAC 125
BSNT_04938___ 126 GCTTTTGCACTTGCTGA---------CAGGTACGCTGCCGGCCAAGGAA- 165
||||||.| |.|| ||||| .||||
BPUM_2979 126 ---------CTTGCTTAAAATGATCTCTGG---GCTGC------TGGAAC 157
BSNT_04938___ 166 --GGCAGGGTTTATCTGGCTGGAAA---ACTGCTG-GCGGACTA-----T 204
|.||| ||||.| ||..||| ||||.|.| |
BPUM_2979 158 CTGACAG------------TGGAGAGGTACGCCTGAGCGGTCAACTGGTT 195
BSNT_04938___ 205 AAA---------CCGAAGGAACTGGCGCAAATCATGGCTGTCCTGCCGCA 245
||| ||.||.|..||.|||||||..||||||||.||.|||||
BPUM_2979 196 AAATCCTACCGTCCAAAAGCGCTTGCGCAAAAAATGGCTGTTCTACCGCA 245
BSNT_04938___ 246 AAAAACGGATCAAGCCTTCACCTTTACCGTCGAAGAAACTGTAGCCTTTG 295
.||||||||.|||||||||.|.|||||.||.||||||||..|....||.|
BPUM_2979 246 GAAAACGGACCAAGCCTTCTCATTTACAGTGGAAGAAACGATTCAATTCG 295
BSNT_04938___ 296 GCAGATATCCATTCCAAACGGGACTGTTCAGACAGCAGACTGAAAAGGAT 345
|..|.||.||.|..||||..||| .|.|.|||..|||..|.|.|.
BPUM_2979 296 GTCGTTACCCGTATCAAAAAGGA------TGGCTGCAATCTGTTACGCAA 339
BSNT_04938___ 346 GAAGCCATTGTACAGG---------AAGCAATGGAGCAAACAGGAGTGGC 386
|||| .|||||||| |||..|||||.|||||.||.||.||
BPUM_2979 340 GAAG---ATGTACAGGTCGTCAGCAAAGTCATGGAACAAACGGGTGTTGC 386
BSNT_04938___ 387 CGATTTTGCGCAA--AAGCCGATTCGCGAACTAAGCGGAGGGGAACAGCA 434
..|.|||..| || ||.|| ||||..||.||||||||.||.|||||.||
BPUM_2979 387 ACAGTTTAAG-AATCAATCC-ATTCATGAGCTAAGCGGGGGAGAACAACA 434
BSNT_04938___ 435 GCGGGTGTATTTGGCACAAGCTTTGGCACAGCAGCCGCGCATTTTATTTT 484
|||.|||||.||||||||.||..|.||.||||||||...|..||||||..
BPUM_2979 435 GCGTGTGTACTTGGCACAGGCACTAGCCCAGCAGCCTGACTATTTATTGC 484
BSNT_04938___ 485 TGGACGAGCCGACTAATTTTCTCGATCTGGCTTATCAAAAAGACCTGCTT 534
|.||.||.||.||.|.||||||.|||.||||.||||||||||||.|||||
BPUM_2979 485 TTGATGAACCAACCAGTTTTCTTGATTTGGCCTATCAAAAAGACTTGCTT 534
BSNT_04938___ 535 GATCTGATCAAACGCCTGACGAGAGAAAGCG----------GATTGGCGG 574
|||.|.||.||| || ||||| || ||||..||
BPUM_2979 535 GATTTAATTAAA--------GA-AGAAA-CGACTTCCTCTAGATTAACG- 573
BSNT_04938___ 575 CTGTCA---GCGTTTTTCATGATCTGAACACCGCAAGCCTGTACTGTGAT 621
|||| |.||.|||||||||.||||||.|||.||..||||.||||||
BPUM_2979 574 --GTCATTGGTGTATTTCATGATGTGAACATCGCCAGTTTGTATTGTGAT 621
BSNT_04938___ 622 GAG---CTCATG-TTTATGAAAAACGGTACCGCCGGGCCTAAGCAAAAAC 667
..| |||.|| ||.||| |||.|||.||
BPUM_2979 622 CGGCTACTCCTGCTTGATG---------------------AAGGAAAGAC 650
BSNT_04938___ 668 CGGAATATGCT----------------GT------CACAGAACAAAGCAT 695
|| |||||.| || |||.||||.||.|
BPUM_2979 651 CG--ATATGTTAGGGTTGCCGCATCACGTCTTGACCACTGAACGAATC-- 696
BSNT_04938___ 696 AAAGGCG-GTGTACGATACAGATGT--CACCGCCTTGGTACATCAAAGCT 742
|..|| |||||..|.|||.|||| |||||| |.||.|| |
BPUM_2979 697 --AACCGTGTGTATAAAACAAATGTGACACCGC-----TCCAGCA----T 735
BSNT_04938___ 743 CACCT-------AAACC----GATGATTGTGATTCAGCCTGAAAAAGATA 781
| |.| ||||| |.||||.| ||.|||||
BPUM_2979 736 C-CATTTAGGGCAAACCCTCAGCTGATCG---TTGAGCCT---------- 771
BSNT_04938___ 782 GCG--------TGAAGCAGCAGTCTATCCCATTTG-AAGCATTGCTCCAA 822
||| |.||||| |||| ||| ||.||| |
BPUM_2979 772 GCGGCCTCTTCTAAAGCA----TCTA------TTGTAAACAT-------A 804
BSNT_04938___ 823 GCGG--GGCGTGATGACATTCTTCTGCAAACGGA---------------A 855
..|| |||..||.|||||....|| ||.|.||| |
BPUM_2979 805 ATGGATGGCTGGAGGACATATGGCT-CAGAAGGAATGACGTTTTCCGTGA 853
BSNT_04938___ 856 ATC--CCGCTTCGAACAT--TGTCCTCCACGCCTAT--------CGGTGC 893
||| ||.||||| ||| |.|||| ||| || |||.|.
BPUM_2979 854 ATCAGCCTCTTCG--CATCCTTTCCT-CAC----ATAAGAAAAACGGCGG 896
BSNT_04938___ 894 AGGGTTTTCG-----------TGGAGCAGGA-CGCTGATCCATAAACGGC 931
|...||||.| ||||.|.||| ||..||| ||
BPUM_2979 897 ATTCTTTTGGAAAAGGTCTATTGGAACGGGATCGAAGAT---------GC 937
BSNT_04938___ 932 TGCCAGATCAGCCAGATCCGATAGAAGGACTTACGGCCTGTCTTTC-AGA 980
|.|..||.||||.|||.||.|..|||| .||.| ||||.|||| |||
BPUM_2979 938 TTCATGAACAGCTAGAGCCAACTGAAG---ATATG--CTGTTTTTCGAGA 982
BSNT_04938___ 981 AAG----CGGTTTTCAAC------------------TGCAGGAGACG--- 1005
||| |||.|| |.| |||.|.|||||
BPUM_2979 983 AAGGTAACGGATT--AGCGGAATATGCCGCAGAAGATGCCGAAGACGATA 1030
BSNT_04938___ 1006 ------TGTGCG--ATGGCTTCTTCAGAAAGACTTGACCATTTCGTGTAT 1047
|.|.|| || |||||..|||.||||.|||||.||||.|..|||
BPUM_2979 1031 TGATCCTTTACGGCAT-GCTTCAGCAGGAAGAGTTGACTATTTGGCTTAT 1079
BSNT_04938___ 1048 CGAACATATGAAGACGGAGAGTTATCCGTTTTCATATGCGTTCAGACCGG 1097
| .|||| ||| ||| ||.|| ||..|.||.|.|
BPUM_2979 1080 C------TTGAA-ACG-------ATC----TTTAT---CGGACGGAGCAG 1108
BSNT_04938___ 1098 CTTTTCGATTTGGATTTTGATTAACGGCT-ATGCGGCAGATCAATTCTTC 1146
||.|| |.||| |||.|||||.|.| |.|.|
BPUM_2979 1109 CTGTT-------------------CAGCTCATGGGGCAGCTTA--TGTAC 1137
BSNT_04938___ 1147 ATCAAGGCTCTTATGGCTGCCGAAGC-AGAACGGACGAAAGTGCTGGGAG 1195
|||| .||||| ||||
BPUM_2979 1138 ATCA----------------TGAAGCAAGAA------------------- 1152
BSNT_04938___ 1196 ACGGAAGAGGCACAGGTGAT-------ATTCTC-----ATCGCCGCGACT 1233
|||.||.|| ||..|| |||||.|| |..
BPUM_2979 1153 -----------ACAAGTTATCCGTTCCATCATCTTTGTATCGCAGC-ATC 1190
BSNT_04938___ 1234 CAA-ACTCAGCAATCCGAAAA------CATAGAACAGCGGCTGAACCAAT 1276
||| ||.|||.||.|.|||.| |.|| || ||||
BPUM_2979 1191 CAATACGCAGGAAACGGAAGATGACCTCTTA------CG--TGAA----- 1227
BSNT_04938___ 1277 TGAT-------AAAGA---AAGGG---------ACAGCTGAATGT-AT-- 1304
.||| ||||| ||||| || |.||||.|| ||
BPUM_2979 1228 AGATTAGGACAAAAGATGCAAGGGCTTCTTCATAC-GTTGAAAGTCATTC 1276
BSNT_04938___ 1305 AAAAGAGGCTGCTGAGTTGTTTGAATAA 1332
||||| |||
BPUM_2979 1277 AAAAG-------TGA------------- 1284
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