Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04938 and BPUM_2979

See Amino acid alignment / Visit BSNT_04938 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_04938___yvrA.1.24716.seq
#    -bsequence dna-align/BPUM_2979.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04938___yvrA-BPUM_2979.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04938___yvrA-BPUM_2979.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: BPUM_2979
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1578
# Identity:     811/1578 (51.4%)
# Similarity:   811/1578 (51.4%)
# Gaps:         540/1578 (34.2%)
# Score: 1943.0
# 
#
#=======================================

BSNT_04938___      1 ATGA------TGAAGGCAGAAGGGCTGTC--GGGAGGATACGGCGACAGC     42
                     ||||      ||||   ||||     |||  .||.|||||.||.||    
BPUM_2979          1 ATGATTCAAGTGAA---AGAA-----GTCAAAGGTGGATATGGAGA----     38

BSNT_04938___     43 CGCCTAATTAACAATGTCAGCTTAACCGTGG---------AGAAG-----     78
                             .||..|.||||   ||  |||||         .||||     
BPUM_2979         39 --------GAAAGAGGTCA---TA--CGTGGCATCAGTCTTGAAGTAAAA     75

BSNT_04938___     79 ---GGAGAATTTCTCGGAATTCTCGGCCCTAATGGAAGCGGAAAAACCAC    125
                        ||||||||||||||.|||||.||.||.|||||||||||.||..|.||
BPUM_2979         76 CAAGGAGAATTTCTCGGTATTCTTGGTCCAAATGGAAGCGGGAAGTCGAC    125

BSNT_04938___    126 GCTTTTGCACTTGCTGA---------CAGGTACGCTGCCGGCCAAGGAA-    165
                              ||||||.|         |.||   |||||      .|||| 
BPUM_2979        126 ---------CTTGCTTAAAATGATCTCTGG---GCTGC------TGGAAC    157

BSNT_04938___    166 --GGCAGGGTTTATCTGGCTGGAAA---ACTGCTG-GCGGACTA-----T    204
                       |.|||            ||||.|   ||..||| ||||.|.|     |
BPUM_2979        158 CTGACAG------------TGGAGAGGTACGCCTGAGCGGTCAACTGGTT    195

BSNT_04938___    205 AAA---------CCGAAGGAACTGGCGCAAATCATGGCTGTCCTGCCGCA    245
                     |||         ||.||.|..||.|||||||..||||||||.||.|||||
BPUM_2979        196 AAATCCTACCGTCCAAAAGCGCTTGCGCAAAAAATGGCTGTTCTACCGCA    245

BSNT_04938___    246 AAAAACGGATCAAGCCTTCACCTTTACCGTCGAAGAAACTGTAGCCTTTG    295
                     .||||||||.|||||||||.|.|||||.||.||||||||..|....||.|
BPUM_2979        246 GAAAACGGACCAAGCCTTCTCATTTACAGTGGAAGAAACGATTCAATTCG    295

BSNT_04938___    296 GCAGATATCCATTCCAAACGGGACTGTTCAGACAGCAGACTGAAAAGGAT    345
                     |..|.||.||.|..||||..|||      .|.|.|||..|||..|.|.|.
BPUM_2979        296 GTCGTTACCCGTATCAAAAAGGA------TGGCTGCAATCTGTTACGCAA    339

BSNT_04938___    346 GAAGCCATTGTACAGG---------AAGCAATGGAGCAAACAGGAGTGGC    386
                     ||||   .||||||||         |||..|||||.|||||.||.||.||
BPUM_2979        340 GAAG---ATGTACAGGTCGTCAGCAAAGTCATGGAACAAACGGGTGTTGC    386

BSNT_04938___    387 CGATTTTGCGCAA--AAGCCGATTCGCGAACTAAGCGGAGGGGAACAGCA    434
                     ..|.|||..| ||  ||.|| ||||..||.||||||||.||.|||||.||
BPUM_2979        387 ACAGTTTAAG-AATCAATCC-ATTCATGAGCTAAGCGGGGGAGAACAACA    434

BSNT_04938___    435 GCGGGTGTATTTGGCACAAGCTTTGGCACAGCAGCCGCGCATTTTATTTT    484
                     |||.|||||.||||||||.||..|.||.||||||||...|..||||||..
BPUM_2979        435 GCGTGTGTACTTGGCACAGGCACTAGCCCAGCAGCCTGACTATTTATTGC    484

BSNT_04938___    485 TGGACGAGCCGACTAATTTTCTCGATCTGGCTTATCAAAAAGACCTGCTT    534
                     |.||.||.||.||.|.||||||.|||.||||.||||||||||||.|||||
BPUM_2979        485 TTGATGAACCAACCAGTTTTCTTGATTTGGCCTATCAAAAAGACTTGCTT    534

BSNT_04938___    535 GATCTGATCAAACGCCTGACGAGAGAAAGCG----------GATTGGCGG    574
                     |||.|.||.|||        || ||||| ||          ||||..|| 
BPUM_2979        535 GATTTAATTAAA--------GA-AGAAA-CGACTTCCTCTAGATTAACG-    573

BSNT_04938___    575 CTGTCA---GCGTTTTTCATGATCTGAACACCGCAAGCCTGTACTGTGAT    621
                       ||||   |.||.|||||||||.||||||.|||.||..||||.||||||
BPUM_2979        574 --GTCATTGGTGTATTTCATGATGTGAACATCGCCAGTTTGTATTGTGAT    621

BSNT_04938___    622 GAG---CTCATG-TTTATGAAAAACGGTACCGCCGGGCCTAAGCAAAAAC    667
                     ..|   |||.|| ||.|||                     |||.|||.||
BPUM_2979        622 CGGCTACTCCTGCTTGATG---------------------AAGGAAAGAC    650

BSNT_04938___    668 CGGAATATGCT----------------GT------CACAGAACAAAGCAT    695
                     ||  |||||.|                ||      |||.||||.||.|  
BPUM_2979        651 CG--ATATGTTAGGGTTGCCGCATCACGTCTTGACCACTGAACGAATC--    696

BSNT_04938___    696 AAAGGCG-GTGTACGATACAGATGT--CACCGCCTTGGTACATCAAAGCT    742
                       |..|| |||||..|.|||.||||  ||||||     |.||.||    |
BPUM_2979        697 --AACCGTGTGTATAAAACAAATGTGACACCGC-----TCCAGCA----T    735

BSNT_04938___    743 CACCT-------AAACC----GATGATTGTGATTCAGCCTGAAAAAGATA    781
                     | |.|       |||||    |.||||.|   ||.|||||          
BPUM_2979        736 C-CATTTAGGGCAAACCCTCAGCTGATCG---TTGAGCCT----------    771

BSNT_04938___    782 GCG--------TGAAGCAGCAGTCTATCCCATTTG-AAGCATTGCTCCAA    822
                     |||        |.|||||    ||||      ||| ||.|||       |
BPUM_2979        772 GCGGCCTCTTCTAAAGCA----TCTA------TTGTAAACAT-------A    804

BSNT_04938___    823 GCGG--GGCGTGATGACATTCTTCTGCAAACGGA---------------A    855
                     ..||  |||..||.|||||....|| ||.|.|||               |
BPUM_2979        805 ATGGATGGCTGGAGGACATATGGCT-CAGAAGGAATGACGTTTTCCGTGA    853

BSNT_04938___    856 ATC--CCGCTTCGAACAT--TGTCCTCCACGCCTAT--------CGGTGC    893
                     |||  ||.|||||  |||  |.|||| |||    ||        |||.|.
BPUM_2979        854 ATCAGCCTCTTCG--CATCCTTTCCT-CAC----ATAAGAAAAACGGCGG    896

BSNT_04938___    894 AGGGTTTTCG-----------TGGAGCAGGA-CGCTGATCCATAAACGGC    931
                     |...||||.|           ||||.|.||| ||..|||         ||
BPUM_2979        897 ATTCTTTTGGAAAAGGTCTATTGGAACGGGATCGAAGAT---------GC    937

BSNT_04938___    932 TGCCAGATCAGCCAGATCCGATAGAAGGACTTACGGCCTGTCTTTC-AGA    980
                     |.|..||.||||.|||.||.|..||||   .||.|  ||||.|||| |||
BPUM_2979        938 TTCATGAACAGCTAGAGCCAACTGAAG---ATATG--CTGTTTTTCGAGA    982

BSNT_04938___    981 AAG----CGGTTTTCAAC------------------TGCAGGAGACG---   1005
                     |||    |||.||  |.|                  |||.|.|||||   
BPUM_2979        983 AAGGTAACGGATT--AGCGGAATATGCCGCAGAAGATGCCGAAGACGATA   1030

BSNT_04938___   1006 ------TGTGCG--ATGGCTTCTTCAGAAAGACTTGACCATTTCGTGTAT   1047
                           |.|.||  || |||||..|||.||||.|||||.||||.|..|||
BPUM_2979       1031 TGATCCTTTACGGCAT-GCTTCAGCAGGAAGAGTTGACTATTTGGCTTAT   1079

BSNT_04938___   1048 CGAACATATGAAGACGGAGAGTTATCCGTTTTCATATGCGTTCAGACCGG   1097
                     |      .|||| |||       |||    ||.||   ||..|.||.|.|
BPUM_2979       1080 C------TTGAA-ACG-------ATC----TTTAT---CGGACGGAGCAG   1108

BSNT_04938___   1098 CTTTTCGATTTGGATTTTGATTAACGGCT-ATGCGGCAGATCAATTCTTC   1146
                     ||.||                   |.||| |||.|||||.|.|  |.|.|
BPUM_2979       1109 CTGTT-------------------CAGCTCATGGGGCAGCTTA--TGTAC   1137

BSNT_04938___   1147 ATCAAGGCTCTTATGGCTGCCGAAGC-AGAACGGACGAAAGTGCTGGGAG   1195
                     ||||                .||||| ||||                   
BPUM_2979       1138 ATCA----------------TGAAGCAAGAA-------------------   1152

BSNT_04938___   1196 ACGGAAGAGGCACAGGTGAT-------ATTCTC-----ATCGCCGCGACT   1233
                                |||.||.||       ||..||     |||||.|| |..
BPUM_2979       1153 -----------ACAAGTTATCCGTTCCATCATCTTTGTATCGCAGC-ATC   1190

BSNT_04938___   1234 CAA-ACTCAGCAATCCGAAAA------CATAGAACAGCGGCTGAACCAAT   1276
                     ||| ||.|||.||.|.|||.|      |.||      ||  ||||     
BPUM_2979       1191 CAATACGCAGGAAACGGAAGATGACCTCTTA------CG--TGAA-----   1227

BSNT_04938___   1277 TGAT-------AAAGA---AAGGG---------ACAGCTGAATGT-AT--   1304
                     .|||       |||||   |||||         || |.||||.|| ||  
BPUM_2979       1228 AGATTAGGACAAAAGATGCAAGGGCTTCTTCATAC-GTTGAAAGTCATTC   1276

BSNT_04938___   1305 AAAAGAGGCTGCTGAGTTGTTTGAATAA   1332
                     |||||       |||             
BPUM_2979       1277 AAAAG-------TGA-------------   1284


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