Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04943 and BPUM_2971

See DNA alignment / Visit BSNT_04943 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence pep-align/BSNT_04943___yvrD.1.24716.seq
#    -bsequence pep-align/BPUM_2971.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04943___yvrD-BPUM_2971.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04943___yvrD-BPUM_2971.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04943___yvrD
# 2: BPUM_2971
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 277
# Identity:      75/277 (27.1%)
# Similarity:   135/277 (48.7%)
# Gaps:          43/277 (15.5%)
# Score: 283.0
# 
#
#=======================================

BSNT_04943___      1 MDLQLKDKLVLITGSTSGIGKAAAKSFLQEGAAVIVNGRKQ-------ET     43
                       :.|::|:.:|||::.|||:|.|::...|||.|::||..:       .:
BPUM_2971          1 --MTLQNKVAIITGASRGIGRAIAEALAGEGARVVINGTNELLLQDVCSS     48

BSNT_04943___     44 VNRTIEELSGYGTVHGAAADLSKTDEAAAFIEKV-NEIGDIDILVNNLGF     92
                     :|:. |:.:.|     .|.|.|..:.:||.:|:. ...|.||:||||.|.
BPUM_2971         49 LNKE-EKRAIY-----VAGDASLPETSAALVEQAKTHFGQIDLLVNNAGI     92

BSNT_04943___     93 FEVKDFADVTDEEWNQYFEVNVMSAVRTSRHFLPKMLAKNSGRILNIASE    142
                     ...|...:.:.|||.:..::|:.......:..:|:|:.:.||:|::::|.
BPUM_2971         93 NLRKSTVETSLEEWKRLIDINLTGTFLMCQAVIPEMIKQKSGKIVSMSST    142

BSNT_04943___    143 AGVKPLPTMIP-YSMTKTALISLSRGMAEMTKGTNVTVNSVLPGPTWTEG    191
                     .|..|.....| |..:|..:..|:..:|:.....::.||:|.|||..|: 
BPUM_2971        143 TGKTPHQNASPAYGASKAGINYLTMHLAKELAEHHIHVNAVCPGPVETD-    191

BSNT_04943___    192 VASYMEGAAKAAGQDTDTFIKDYFKVNEPTSLIQR-----YATAEEVANT    236
                               .:.|.:|.:.:         |::.|     ..|.|:||:.
BPUM_2971        192 ----------MSKQWSDEYRR---------SVLDRIPLKQIGTPEQVAHV    222

BSNT_04943___    237 IVFLASDAASAINGTAQRVEGGIIRSL    263
                     :.|||||.:..|.|....:.||...: 
BPUM_2971        223 VTFLASDQSDFITGETINMNGGTYMN-    248


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