Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04943 and BPUM_2971

See Amino acid alignment / Visit BSNT_04943 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_04943___yvrD.1.24716.seq
#    -bsequence dna-align/BPUM_2971.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04943___yvrD-BPUM_2971.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04943___yvrD-BPUM_2971.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04943___yvrD
# 2: BPUM_2971
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity:     452/958 (47.2%)
# Similarity:   452/958 (47.2%)
# Gaps:         377/958 (39.4%)
# Score: 767.0
# 
#
#=======================================

BSNT_04943___      1 ATGGATTTACAGCTAAAAGACAAACTCGTCTTAATCACCG--GCTCGACG     48
                     .||..|||||      ||.|.|||.|.|...|.||.||.|  |||.|..|
BPUM_2971          1 GTGACTTTAC------AAAATAAAGTAGCAATTATTACAGGTGCTAGCAG     44

BSNT_04943___     49 TCCGGTATCGGGAAAGCC--GCC---------GCAAAAAGCTTTCTGCAA     87
                       .||.||||     |||  |||         |||     |||.||| .|
BPUM_2971         45 --AGGGATCG-----GCCGTGCCATTGCAGAGGCA-----CTTGCTG-GA     81

BSNT_04943___     88 GAGGGTGCG-GCAGTCATTGTC-----AACGGACGCAA--------ACAG    123
                     ||.||.||| || |||.||.||     ||||.||| ||        |||.
BPUM_2971         82 GAAGGGGCGCGC-GTCGTTATCAATGGAACGAACG-AACTGTTGCTACAA    129

BSNT_04943___    124 GA-GACTGTTAATCGC--ACGATTGAAGAG--------CTTTCTGGATAT    162
                     || |..||||.|||.|  |..|..||||||        |.||     |||
BPUM_2971        130 GATGTTTGTTCATCACTAAATAAAGAAGAGAAACGAGCCATT-----TAT    174

BSNT_04943___    163 GGAACGGTGCACGGTGCTGCTGCCGA-TTTGTCAAAAACAGATGA-AGCA    210
                          |.||| .||||.||||    | |||      |.|||| || |.|.
BPUM_2971        175 -----GTTGC-TGGTGATGCT----AGTTT------ACCAGA-GACATCG    207

BSNT_04943___    211 GCGGCTTTTATTGAAAAAGTAAATGAAA-------TCGGTGATATTGATA    253
                     ||.|||.||.|.|||.|||    .||||       |.||..|.||||||.
BPUM_2971        208 GCTGCTCTTGTAGAACAAG----CGAAAACACATTTTGGACAAATTGATC    253

BSNT_04943___    254 TCCTTGTCAACAACCTTGGTTTCTTCGAGGTAAAAGACTTTGCCG--ATG    301
                     |..|.||.||||||...|||.||             |.|||.|.|  ||.
BPUM_2971        254 TGTTGGTGAACAACGCCGGTATC-------------AATTTACGGAAATC    290

BSNT_04943___    302 TGACAG------------ATGAAGAGTGGAATCAAT------------AT    327
                     | ||||            .|||.||.|||||.|.||            ||
BPUM_2971        291 T-ACAGTGGAGACCTCCCTTGAGGAATGGAAACGATTAATTGATATTAAT    339

BSNT_04943___    328 TTCGAAGTGAACG----TGATGAGCGCCGTTCGGACAAGCCGTCACTTCC    373
                     || ||...|.|||    |||||.||          |||||.||||     
BPUM_2971        340 TT-GACTGGCACGTTCCTGATGTGC----------CAAGCTGTCA-----    373

BSNT_04943___    374 TTCCAAAAATGCTTGCCA---AAAACAGCGGCCGCATTTTAAATATTG-C    419
                     |.||..|.|||.|   ||   ||||.|||||         |||.|||| |
BPUM_2971        374 TCCCTGAGATGAT---CAAACAAAAGAGCGG---------AAAAATTGTC    411

BSNT_04943___    420 AAGTGAAGCAGGCGT----CAAACCGCTGCCAACGATGATTCCATACTCA    465
                           ||||.|.||    |||    |||.|||     |..||   ||||
BPUM_2971        412 ------AGCATGAGTTCTACAA----CTGGCAA-----AACCC---CTCA    443

BSNT_04943___    466 ATGACAAAA--------------ACGGCGCTGATCAGCCTTTCAAGAGGA    501
                        .|||||              |||||||          |||||.|   
BPUM_2971        444 ---TCAAAATGCATCGCCTGCATACGGCGC----------TTCAAAA---    477

BSNT_04943___    502 ATGGCTGAAATGACAAAAGGCACAAATGTGACGGTTAACTCAGTGCTCCC    551
                        ||||..||           |||.|.|     |||||           
BPUM_2971        478 ---GCTGGTAT-----------CAACTAT-----TTAAC-----------    497

BSNT_04943___    552 GGGA--CCTACTTG-GACAGA--GGGCGTG-GCATCCTAT--ATG-GAAG    592
                       ||  |.| |||| ||.|||  ..|| || |||||.|||  ||| .||.
BPUM_2971        498 --GATGCAT-CTTGCGAAAGAATTAGC-TGAGCATCATATCCATGTCAAT    543

BSNT_04943___    593 GC-----GCCGCAAAAGCAGCCGGCCAG--GATACAGATACATTTATCAA    635
                     ||     |||       |||  |.||||  ||.||||  ||||       
BPUM_2971        544 GCTGTCTGCC-------CAG--GTCCAGTTGAAACAG--ACAT-------    575

BSNT_04943___    636 AGACTATTTCAAGGTCAAT-GAGCCA-----ACCTCACTT----------    669
                      ||     .||||  |||| ||||.|     |||.|..||          
BPUM_2971        576 -GA-----GCAAG--CAATGGAGCGATGAATACCGCCGTTCTGTTTTAGA    617

BSNT_04943___    670 ----ATTCAGC---GATAC-----GCGACAGCAGAAGAAGTCGCCAACAC    707
                         ||||  |   ||.||     |..|||.|||||.|.||||    |||
BPUM_2971        618 CAGAATTC--CTTTGAAACAAATTGGAACACCAGAACAGGTCG----CAC    661

BSNT_04943___    708 A-ATCGT---ATTCCTCGCGTCTGACGCCG--------CATC--------    737
                     | .||||   |||..|.||.|||||| |.|        ||||        
BPUM_2971        662 ATGTCGTGACATTTTTAGCCTCTGAC-CAGTCTGATTTCATCACAGGAGA    710

BSNT_04943___    738 CGCCATTAACGGCACGGCACAGCGTGTGGAAGGCGGCATTATCCGTTCTC    787
                     ..||||.||               |.||.|.||.||.|     || |.|.
BPUM_2971        711 AACCATCAA---------------TATGAATGGTGGAA-----CG-TATA    739

BSNT_04943___    788 TG---TAG    792
                     ||   |||
BPUM_2971        740 TGAACTAG    747


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