Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04943 and BPUM_2971
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_04943___yvrD.1.24716.seq
# -bsequence dna-align/BPUM_2971.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04943___yvrD-BPUM_2971.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04943___yvrD-BPUM_2971.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04943___yvrD
# 2: BPUM_2971
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity: 452/958 (47.2%)
# Similarity: 452/958 (47.2%)
# Gaps: 377/958 (39.4%)
# Score: 767.0
#
#
#=======================================
BSNT_04943___ 1 ATGGATTTACAGCTAAAAGACAAACTCGTCTTAATCACCG--GCTCGACG 48
.||..||||| ||.|.|||.|.|...|.||.||.| |||.|..|
BPUM_2971 1 GTGACTTTAC------AAAATAAAGTAGCAATTATTACAGGTGCTAGCAG 44
BSNT_04943___ 49 TCCGGTATCGGGAAAGCC--GCC---------GCAAAAAGCTTTCTGCAA 87
.||.|||| ||| ||| ||| |||.||| .|
BPUM_2971 45 --AGGGATCG-----GCCGTGCCATTGCAGAGGCA-----CTTGCTG-GA 81
BSNT_04943___ 88 GAGGGTGCG-GCAGTCATTGTC-----AACGGACGCAA--------ACAG 123
||.||.||| || |||.||.|| ||||.||| || |||.
BPUM_2971 82 GAAGGGGCGCGC-GTCGTTATCAATGGAACGAACG-AACTGTTGCTACAA 129
BSNT_04943___ 124 GA-GACTGTTAATCGC--ACGATTGAAGAG--------CTTTCTGGATAT 162
|| |..||||.|||.| |..|..|||||| |.|| |||
BPUM_2971 130 GATGTTTGTTCATCACTAAATAAAGAAGAGAAACGAGCCATT-----TAT 174
BSNT_04943___ 163 GGAACGGTGCACGGTGCTGCTGCCGA-TTTGTCAAAAACAGATGA-AGCA 210
|.||| .||||.|||| | ||| |.|||| || |.|.
BPUM_2971 175 -----GTTGC-TGGTGATGCT----AGTTT------ACCAGA-GACATCG 207
BSNT_04943___ 211 GCGGCTTTTATTGAAAAAGTAAATGAAA-------TCGGTGATATTGATA 253
||.|||.||.|.|||.||| .|||| |.||..|.||||||.
BPUM_2971 208 GCTGCTCTTGTAGAACAAG----CGAAAACACATTTTGGACAAATTGATC 253
BSNT_04943___ 254 TCCTTGTCAACAACCTTGGTTTCTTCGAGGTAAAAGACTTTGCCG--ATG 301
|..|.||.||||||...|||.|| |.|||.|.| ||.
BPUM_2971 254 TGTTGGTGAACAACGCCGGTATC-------------AATTTACGGAAATC 290
BSNT_04943___ 302 TGACAG------------ATGAAGAGTGGAATCAAT------------AT 327
| |||| .|||.||.|||||.|.|| ||
BPUM_2971 291 T-ACAGTGGAGACCTCCCTTGAGGAATGGAAACGATTAATTGATATTAAT 339
BSNT_04943___ 328 TTCGAAGTGAACG----TGATGAGCGCCGTTCGGACAAGCCGTCACTTCC 373
|| ||...|.||| |||||.|| |||||.||||
BPUM_2971 340 TT-GACTGGCACGTTCCTGATGTGC----------CAAGCTGTCA----- 373
BSNT_04943___ 374 TTCCAAAAATGCTTGCCA---AAAACAGCGGCCGCATTTTAAATATTG-C 419
|.||..|.|||.| || ||||.||||| |||.|||| |
BPUM_2971 374 TCCCTGAGATGAT---CAAACAAAAGAGCGG---------AAAAATTGTC 411
BSNT_04943___ 420 AAGTGAAGCAGGCGT----CAAACCGCTGCCAACGATGATTCCATACTCA 465
||||.|.|| ||| |||.||| |..|| ||||
BPUM_2971 412 ------AGCATGAGTTCTACAA----CTGGCAA-----AACCC---CTCA 443
BSNT_04943___ 466 ATGACAAAA--------------ACGGCGCTGATCAGCCTTTCAAGAGGA 501
.||||| ||||||| |||||.|
BPUM_2971 444 ---TCAAAATGCATCGCCTGCATACGGCGC----------TTCAAAA--- 477
BSNT_04943___ 502 ATGGCTGAAATGACAAAAGGCACAAATGTGACGGTTAACTCAGTGCTCCC 551
||||..|| |||.|.| |||||
BPUM_2971 478 ---GCTGGTAT-----------CAACTAT-----TTAAC----------- 497
BSNT_04943___ 552 GGGA--CCTACTTG-GACAGA--GGGCGTG-GCATCCTAT--ATG-GAAG 592
|| |.| |||| ||.||| ..|| || |||||.||| ||| .||.
BPUM_2971 498 --GATGCAT-CTTGCGAAAGAATTAGC-TGAGCATCATATCCATGTCAAT 543
BSNT_04943___ 593 GC-----GCCGCAAAAGCAGCCGGCCAG--GATACAGATACATTTATCAA 635
|| ||| ||| |.|||| ||.|||| ||||
BPUM_2971 544 GCTGTCTGCC-------CAG--GTCCAGTTGAAACAG--ACAT------- 575
BSNT_04943___ 636 AGACTATTTCAAGGTCAAT-GAGCCA-----ACCTCACTT---------- 669
|| .|||| |||| ||||.| |||.|..||
BPUM_2971 576 -GA-----GCAAG--CAATGGAGCGATGAATACCGCCGTTCTGTTTTAGA 617
BSNT_04943___ 670 ----ATTCAGC---GATAC-----GCGACAGCAGAAGAAGTCGCCAACAC 707
|||| | ||.|| |..|||.|||||.|.|||| |||
BPUM_2971 618 CAGAATTC--CTTTGAAACAAATTGGAACACCAGAACAGGTCG----CAC 661
BSNT_04943___ 708 A-ATCGT---ATTCCTCGCGTCTGACGCCG--------CATC-------- 737
| .|||| |||..|.||.|||||| |.| ||||
BPUM_2971 662 ATGTCGTGACATTTTTAGCCTCTGAC-CAGTCTGATTTCATCACAGGAGA 710
BSNT_04943___ 738 CGCCATTAACGGCACGGCACAGCGTGTGGAAGGCGGCATTATCCGTTCTC 787
..||||.|| |.||.|.||.||.| || |.|.
BPUM_2971 711 AACCATCAA---------------TATGAATGGTGGAA-----CG-TATA 739
BSNT_04943___ 788 TG---TAG 792
|| |||
BPUM_2971 740 TGAACTAG 747
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