Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04888 and BPUM_2950

See DNA alignment / Visit BSNT_04888 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence pep-align/BSNT_04888___yusW.1.24716.seq
#    -bsequence pep-align/BPUM_2950.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04888___yusW-BPUM_2950.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04888___yusW-BPUM_2950.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04888___yusW
# 2: BPUM_2950
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 150
# Identity:      54/150 (36.0%)
# Similarity:    86/150 (57.3%)
# Gaps:           7/150 ( 4.7%)
# Score: 244.0
# 
#
#=======================================

BSNT_04888___      1 MHLIRAAGAVCLAVVLIAGCRFNEDQQQ---AEGENTAVTQLKSVPYSNF     47
                      ...:.||.:.:.:.:::||:..|..||   ||.|:.:..|:|.:|:.:.
BPUM_2950          1 -MCWKKAGQIGVLLFMLSGCQSIEPLQQTKEAEAESLSAVQMKELPFEHL     49

BSNT_04888___     48 SLRVSYGDGEHNRYEGIYTKNGTQEKAEIQDKLSGVNQEGEEALDEMKMI     97
                     .|.|.||. :...||..|.:...:|:|.|:|.::||..||||||.||||.
BPUM_2950         50 HLHVQYGQ-KSELYEATYRQVKGKEEALIRDHMNGVRYEGEEALREMKMK     98

BSNT_04888___     98 LSELSVTDQMAETEVIHSVLAAFNLDSHYDHIDLKLKLKDGSIREIKK--    145
                     |:::||.........::.:|||||||..|..|.:.:||:||:.|..:|  
BPUM_2950         99 LNDMSVPSAKINETYVNELLAAFNLDDDYQRIQVDMKLEDGTKRTFQKKK    148


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.