Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04888 and BPUM_2950
See
Amino acid alignment /
Visit
BSNT_04888 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_04888___yusW.1.24716.seq
# -bsequence dna-align/BPUM_2950.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04888___yusW-BPUM_2950.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04888___yusW-BPUM_2950.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04888___yusW
# 2: BPUM_2950
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 539
# Identity: 270/539 (50.1%)
# Similarity: 270/539 (50.1%)
# Gaps: 193/539 (35.8%)
# Score: 579.0
#
#
#=======================================
BSNT_04888___ 1 ATGCATTTGATCAGAGCAGCCGGG------------GCTG-----TA--- 30
|||..||.|| ||.||.|||| |||| ||
BPUM_2950 1 ATGTGTTGGA----AGAAGGCGGGACAAATAGGAGTGCTGCTTTTTATGC 46
BSNT_04888___ 31 TGTCTCGCAGTGGTTCTGATTGCGGGCTGCCGTTTCAATGAAGACCAGC- 79
|||||.||.||...|| ||| ||.||.|| .|||||
BPUM_2950 47 TGTCTGGCTGTCAATC-GAT--CGAGCCGC-------------TCCAGCA 80
BSNT_04888___ 80 -----AGCAGGCAGAAGGAGAAAATACAGCCGTCACCCAGC--------T 116
||.|.|||||||.|||.| |||.|.|||| |
BPUM_2950 81 AACAAAGGAAGCAGAAGCAGAGA--------GTCTCTCAGCGGTTCAAAT 122
BSNT_04888___ 117 GAAG-----TCCGTTCCCTACAGCAATTTTTC--GCTTCGTGTGAGCTAC 159
|||| |||.| |..|||| |.|| .||.|.|||....|||
BPUM_2950 123 GAAGGAACTTCCAT----TTGAGCA---TCTCCACCTGCATGTTCAATAC 165
BSNT_04888___ 160 GGGGATGGTGAGCATAACCGTTATGAAG-GAATCTATACAAAG------A 202
|| |||.|| ||| |||| |||||.||| |
BPUM_2950 166 GG---------GCAGAA--------AAGCGAAT-TATACGAAGCCACCTA 197
BSNT_04888___ 203 ACGGAACTCAGGAAAAAGCGGAAATACAGGATAAGCTCT----------- 241
.|| |||||.|||| ||.|| ||.|.||||.||
BPUM_2950 198 TCG----TCAGGTAAAA--GGCAA---AGAAGAAGCACTGATTCGTGATC 238
BSNT_04888___ 242 ------CCGGTGTCAATCAGGAGGGAGAAGAAGCATT-----GGATG-AG 279
.|||||||....|.||.||.||||||||||| .|||| ||
BPUM_2950 239 ATATGAACGGTGTCCGCTATGAAGGTGAAGAAGCATTACGCGAGATGAAG 288
BSNT_04888___ 280 ATGA----AAATGAT---TTTGAGCGAGCTTTCCGTA-----ACAGACCA 317
|||| ||||||| |.|| |||| || | |||.||
BPUM_2950 289 ATGAAGCTAAATGATATGTCTG--------TTCC-TAGTGCGA-AGATCA 328
BSNT_04888___ 318 AATGGCTGAAACAGAAGTGATACACAGTGTGC---TGGCAGCATTTAATC 364
| ||||||..|.|| .|.||.|| |.||.||.||||||.
BPUM_2950 329 A-----TGAAACGTATGT------AAATGAGCTATTAGCTGCTTTTAATT 367
BSNT_04888___ 365 TGGACAGTCATTATGATCAT-ATCGATTTAAAAT-----TGAAGCTGAAG 408
|.| ||.|.|||.|| |.|||.||.||.| ||||||||.|.
BPUM_2950 368 TAG------ATGACGATTATCAGCGAATTCAAGTCGATATGAAGCTGGAA 411
BSNT_04888___ 409 GACGGCTCCA---------TCAGAGAAATCAAGAAGTAA 438
||.||..||| || .|||..|||||||.|
BPUM_2950 412 GATGGGACCAAACGTACATTC---CAAAAGAAGAAGTGA 447
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.