Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04888 and BPUM_2950

See Amino acid alignment / Visit BSNT_04888 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_04888___yusW.1.24716.seq
#    -bsequence dna-align/BPUM_2950.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04888___yusW-BPUM_2950.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04888___yusW-BPUM_2950.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04888___yusW
# 2: BPUM_2950
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 539
# Identity:     270/539 (50.1%)
# Similarity:   270/539 (50.1%)
# Gaps:         193/539 (35.8%)
# Score: 579.0
# 
#
#=======================================

BSNT_04888___      1 ATGCATTTGATCAGAGCAGCCGGG------------GCTG-----TA---     30
                     |||..||.||    ||.||.||||            ||||     ||   
BPUM_2950          1 ATGTGTTGGA----AGAAGGCGGGACAAATAGGAGTGCTGCTTTTTATGC     46

BSNT_04888___     31 TGTCTCGCAGTGGTTCTGATTGCGGGCTGCCGTTTCAATGAAGACCAGC-     79
                     |||||.||.||...|| |||  ||.||.||             .||||| 
BPUM_2950         47 TGTCTGGCTGTCAATC-GAT--CGAGCCGC-------------TCCAGCA     80

BSNT_04888___     80 -----AGCAGGCAGAAGGAGAAAATACAGCCGTCACCCAGC--------T    116
                          ||.|.|||||||.|||.|        |||.|.||||        |
BPUM_2950         81 AACAAAGGAAGCAGAAGCAGAGA--------GTCTCTCAGCGGTTCAAAT    122

BSNT_04888___    117 GAAG-----TCCGTTCCCTACAGCAATTTTTC--GCTTCGTGTGAGCTAC    159
                     ||||     |||.|    |..||||   |.||  .||.|.|||....|||
BPUM_2950        123 GAAGGAACTTCCAT----TTGAGCA---TCTCCACCTGCATGTTCAATAC    165

BSNT_04888___    160 GGGGATGGTGAGCATAACCGTTATGAAG-GAATCTATACAAAG------A    202
                     ||         |||.||        ||| |||| |||||.|||      |
BPUM_2950        166 GG---------GCAGAA--------AAGCGAAT-TATACGAAGCCACCTA    197

BSNT_04888___    203 ACGGAACTCAGGAAAAAGCGGAAATACAGGATAAGCTCT-----------    241
                     .||    |||||.||||  ||.||   ||.|.||||.||           
BPUM_2950        198 TCG----TCAGGTAAAA--GGCAA---AGAAGAAGCACTGATTCGTGATC    238

BSNT_04888___    242 ------CCGGTGTCAATCAGGAGGGAGAAGAAGCATT-----GGATG-AG    279
                           .|||||||....|.||.||.|||||||||||     .|||| ||
BPUM_2950        239 ATATGAACGGTGTCCGCTATGAAGGTGAAGAAGCATTACGCGAGATGAAG    288

BSNT_04888___    280 ATGA----AAATGAT---TTTGAGCGAGCTTTCCGTA-----ACAGACCA    317
                     ||||    |||||||   |.||        |||| ||     | |||.||
BPUM_2950        289 ATGAAGCTAAATGATATGTCTG--------TTCC-TAGTGCGA-AGATCA    328

BSNT_04888___    318 AATGGCTGAAACAGAAGTGATACACAGTGTGC---TGGCAGCATTTAATC    364
                     |     ||||||..|.||      .|.||.||   |.||.||.||||||.
BPUM_2950        329 A-----TGAAACGTATGT------AAATGAGCTATTAGCTGCTTTTAATT    367

BSNT_04888___    365 TGGACAGTCATTATGATCAT-ATCGATTTAAAAT-----TGAAGCTGAAG    408
                     |.|      ||.|.|||.|| |.|||.||.||.|     ||||||||.|.
BPUM_2950        368 TAG------ATGACGATTATCAGCGAATTCAAGTCGATATGAAGCTGGAA    411

BSNT_04888___    409 GACGGCTCCA---------TCAGAGAAATCAAGAAGTAA    438
                     ||.||..|||         ||   .|||..|||||||.|
BPUM_2950        412 GATGGGACCAAACGTACATTC---CAAAAGAAGAAGTGA    447


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