Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04797 and BPUM_2903
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence pep-align/BSNT_04797___pucR.1.24716.seq
# -bsequence pep-align/BPUM_2903.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04797___pucR-BPUM_2903.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04797___pucR-BPUM_2903.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04797___pucR
# 2: BPUM_2903
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 169/540 (31.3%)
# Similarity: 245/540 (45.4%)
# Gaps: 163/540 (30.2%)
# Score: 767.5
#
#
#=======================================
BSNT_04797___ 1 MNIFDVMKIPAFENANLIAGKAGGEREVQHVNMMDAPDIADFLHKNELLV 50
BPUM_2903 0 -------------------------------------------------- 0
BSNT_04797___ 51 TTAYHLKDHPHQLSELIRQMAKRGCAGLGIKTKRYLEDIPKEIIELADSY 100
BPUM_2903 0 -------------------------------------------------- 0
BSNT_04797___ 101 AFPIIELPEHIRLGDIVNATLSHILDMRSNELQQAIYAHKKFTNHIMSGK 150
:::..|:.:
BPUM_2903 1 ------------------------MNLDDNQFE----------------- 9
BSNT_04797___ 151 GLQSLLKKVSDLLQLPVLLLDQHAKMLSASHQISVETEKLKGTLNTVSGP 200
.|:|:::.::.||.|.:||.::|..||..|...:.::.. |
BPUM_2903 10 ----TLQKIAERIRHPVYLCNQHGRLLCNSHITSTSPDWIRIL------P 49
BSNT_04797___ 201 FFTC-----FSTISDQKTYSVLPIYNHEKNCGYLLIPDMVQAGDKGLILT 245
||.. ||.|..::||||..|..:.:...|::||..:...|:.|.:.
BPUM_2903 50 FFQSRTPHYFSIIDTKQTYSVFSIDLNAQTYEYVVIPSFILPLDETLQVI 99
BSNT_04797___ 246 IEQAANVISFELLKENALKQFSRRARNEFFSNFIERSFSSDDEIKNRAKE 295
||||.:.||...:::...:|.::|||||.|..:||.:.||..:..:.||.
BPUM_2903 100 IEQAVHEISIARMRQYTAQQTAKRARNEGFRRWIEGASSSQQDDAHIAKS 149
BSNT_04797___ 296 FKLRWDQKYMCIAGKLDRNDESISFTENQLASDSVFEFLEGELSAFPFPP 345
|.|..|..|:|:..:||...|:..|.|.||..:.|.:.|:..|...|||.
BPUM_2903 150 FGLNVDSSYLCMICQLDPYHENTHFLEQQLMIEQVVDLLDSALPHSPFPS 199
BSNT_04797___ 346 HFFMKGNVGIILIEATDSWSEMHASVISFLEQFQTQVSAQFKRTVSFGIS 395
..|:||::.|:|:|.|.:||||...::|||:|.|..||.|...|:|||.|
BPUM_2903 200 FLFVKGDMVIVLMEETGNWSEMSEKLLSFLKQMQILVSIQVNHTISFGAS 249
BSNT_04797___ 396 NICQKLIDVPDAFTEASDALQSGHLSRSTAFIQVYHAKDVPELLRLLPVE 445
....::..:.:.::||.:|||:||||..:.:||.|.|||||:||:|:|.:
BPUM_2903 250 LTSCRITHLSEGYSEALEALQAGHLSAQSEYIQFYQAKDVPDLLKLIPRK 299
BSNT_04797___ 446 DLKKFYNSTLQSLAEKQQEDQSLLHTLSVYLETHCQISETAKRLYVHRNT 495
||..|:...|..|.| ..|:||||:||||||||.||||||||.:||||
BPUM_2903 300 DLVTFHQMHLHPLYE---AGQNLLHTISVYLETHCHISETAKRLSIHRNT 346
BSNT_04797___ 496 VIYRLEKCEELLGKSLKDPETTMRLRLALRMQRLIS---- 531
||||||||||||..||||||.|:|||||||:|.::|
BPUM_2903 347 VIYRLEKCEELLRISLKDPEVTLRLRLALRIQMILSPHPD 386
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