Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04797 and BPUM_2903
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_04797___pucR.1.24716.seq
# -bsequence dna-align/BPUM_2903.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04797___pucR-BPUM_2903.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04797___pucR-BPUM_2903.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04797___pucR
# 2: BPUM_2903
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1770
# Identity: 763/1770 (43.1%)
# Similarity: 763/1770 (43.1%)
# Gaps: 783/1770 (44.2%)
# Score: 1601.0
#
#
#=======================================
BSNT_04797___ 1 ATGAATATTTTTGATGTGATGAAAATACCGGCTTTTGAAAACG----CCA 46
||||| ||| |.||| |||
BPUM_2903 1 ------------------ATGAA--------CTT----AGACGATAACCA 20
BSNT_04797___ 47 ATTT--------------AATCGCTGGAAAAGCAGGAGGGGAAAGAGAGG 82
|||| ||||||| ||||| |.
BPUM_2903 21 ATTTGAAACATTGCAAAAAATCGCT---------------GAAAG---GA 52
BSNT_04797___ 83 TT---CAGCATGTCAATATG----------ATGGACG----CTCCGGATA 115
|| ||.|.||||.||.|| ||||.|| |||.|.|..
BPUM_2903 53 TTCGCCACCCTGTCTATTTGTGTAACCAGCATGGGCGTCTTCTCTGCAAC 102
BSNT_04797___ 116 TCGCAGACTTTTTGCATAAGAATGAATTGCTCGTCACCACC----GCCTA 161
||||| |.||||||.| ||
BPUM_2903 103 TCGCA--------------------------CATCACCAGCACGAGC--- 123
BSNT_04797___ 162 TCACCTGA-AGGATCACCCGCATCAATTATCTGAACTGATTCGGCAAATG 210
||.|| .|||| .||||| |||...||..|||
BPUM_2903 124 ---CCAGATTGGAT---TCGCAT------TCTCCCCTTTTTC-------- 153
BSNT_04797___ 211 GCAAAACGCGGCTGCGCGGGCCTCGGCATTAAAACAAAGCGCTATCTGGA 260
|||| ||.||.|.|..||||| |.|.|.||
BPUM_2903 154 -CAAA----------GCAGGACACCCCATTA-----------TTTTTCGA 181
BSNT_04797___ 261 ----AGATATCCCGAAGGAAATCATCGAACTGGCCGATTCATATGCGTTT 306
||||| |||||.||| ||.|||| ||..|||
BPUM_2903 182 TAATAGATA---CGAAGCAAA------------CCTATTC---TGTTTTT 213
BSNT_04797___ 307 CCGATCATTGAACTTCCAGAACACATCCGCCTCGGCGATATTGTAAATGC 356
.||||
BPUM_2903 214 TCGAT--------------------------------------------- 218
BSNT_04797___ 357 CACACTCAGCCACATTCTCGATATGCGTTCTAACGAGCTGCAGCAAGCCA 406
||.|||||
BPUM_2903 219 -------------------------CGATCTAA----------------- 226
BSNT_04797___ 407 TTTACGCGCACAAAAAATTCACAAACCACATTATGAGCGGCAAGGGGCTG 456
.||||||||.| ||||||
BPUM_2903 227 -----ACGCACAAACA---------------TATGAG------------- 243
BSNT_04797___ 457 CAATCCCTCCTCAAAAAGGT-GTCAGACC-TCCTTCA-GCTTCCCGTGCT 503
.|.|| ||||..|| ||.|||| .|||||
BPUM_2903 244 ---------------TATGTGGTCATCCCATCGTTCATTCTTCC------ 272
BSNT_04797___ 504 GCTGCTTGACCAGCATGCCAAAATGCTGTCCGCGTCTCATCAGATTTCAG 553
||||| ||| |||..|| ||...||||||
BPUM_2903 273 ---GCTTG------ATG---AAACACT----GCAAGTCATCA-------- 298
BSNT_04797___ 554 TTGAGACCGAAAAGCTGAAAGGCACCCTGAATACCGTATCCGGGCCATTT 603
|||| |.||||.|.| ||| ||| |||
BPUM_2903 299 TTGA-----ACAAGCAGTA---CAC---GAA------ATC---------- 321
BSNT_04797___ 604 TTCACTTGTTTCTCTACAATCTCAGATCAGAAAACATATTCTGTCCTGCC 653
|||.||| |.|..||.||..| ||||.|||.||.||
BPUM_2903 322 -TCAATTG------------CGCGAATGAGGCA--ATATACTGCCCAGC- 355
BSNT_04797___ 654 TATTTATAATCACGAAAAAAACTGCGGATACCTG-CTGATAC-------- 694
||||.|| .|..|.|| |.||.||
BPUM_2903 356 ------------------AAACGGC-CAAGCGTGCCAGAAACGAAGGGTT 386
BSNT_04797___ 695 -CGGACATGGTCCAGGCCGGCGATAAAGGATTGATCCTC----------- 732
||.|.||| ||||.|||.|..|||.||
BPUM_2903 387 TCGCAGATG------------GATAGAGGGTGCATCGTCTTCTCAGCAAG 424
BSNT_04797___ 733 ACGATTGAACAAGCGGCCAACGTCATTTCCTTTGAACTGCTGAAGGA--A 780
|||| ||.|||....||.|| ||||||| ||| |
BPUM_2903 425 ACGA-TGCACACATTGCGAA-GTCATTT----------------GGATTA 456
BSNT_04797___ 781 AATGCGCT-GA-AGCAGTTCAGCCGGCGGGCCCGCA-------ATGAGTT 821
|||| | || |||||.| | |||| |.
BPUM_2903 457 AATG---TAGATAGCAGCT----------------ATCTATGTATGA-TC 486
BSNT_04797___ 822 TTTCAGCAATTTTATTGAGCGGTCCTTTTCTTCAGATGACGAAATCAAAA 871
|.||||| |||| |||.|.||.|.|||..||
BPUM_2903 487 TGTCAGC-------TTGA----TCCGTATCATGAGAACAC---------- 515
BSNT_04797___ 872 ACCGGGCGAAAGAATTCA--------AGCTGC-GCTGGGATCAAAAATAC 912
||| |||.|| .|| |||.|.|.| ||
BPUM_2903 516 ---------------TCATTTTTTAGAGCAGCAACT--GATGATAGA-AC 547
BSNT_04797___ 913 ATGTGCATTGCCGGCAAACTCGATCGCAATGACGAATCAATCAGCTTTAC 962
|.|| |.||| |||.|||..||
BPUM_2903 548 AAGT-CGTTG-----------------------------ATCTGCTCGAC 567
BSNT_04797___ 963 AGAAAATCAGCT-CGCTTCCGACAGCGTATTCGAATTTCTTGAAGGTGAA 1011
|| | |.||||| || |.||...||||
BPUM_2903 568 AG---------TGCACTTCC-AC-----ACTCTCCTTTC----------- 591
BSNT_04797___ 1012 TTATCAGCCTTCCCGTTTCCGCCTCACTTCTTTATGAAAGGAAATGTCGG 1061
|||||| ||| ||.||..|.|||||..||.|.|.
BPUM_2903 592 -------CCTTCC--TTT---------TTATTCGTCAAAGGGGATATGGT 623
BSNT_04797___ 1062 CATTATTCTAATCGAGGCGACAGACAGCTG---------GAGTGAAATGC 1102
||||.||.||||.||.|.|||.|.||..|| |||||||| .
BPUM_2903 624 CATTGTTTTAATGGAAGAGACGGGCAATTGGTCAGAGATGAGTGAAA--A 671
BSNT_04797___ 1103 ACGCCTCGGTGATCAGCTTTTTAG-AACAGTTTCAAACACAGGTCAGCGC 1151
||.||| ..||||||.| ||||..|.||.|.||..||.|||..
BPUM_2903 672 ACTCCT--------TTCTTTTTTGAAACAAATGCAGATACTCGTTAGCAT 713
BSNT_04797___ 1152 TCAATTTAAACGAACCGTGTCCTTTG---------------------GCA 1180
.|||.|.||.|..|||.|.||||||| |||
BPUM_2903 714 ACAAGTGAATCACACCATTTCCTTTGGCGCGAGCTTGACTAGTTGTCGCA 763
BSNT_04797___ 1181 TCAGCAATATCTGCCAAAAGCTCATTGATGTTCCCGACGCTTTCACA--G 1228
|||.| .|||||.| |||.| ||| ||| |
BPUM_2903 764 TCACC--CATCTGTC----------TGAGG--------GCT---ACAGTG 790
BSNT_04797___ 1229 AAGCTTCTGATGCTCTGCAATCGGGGCATTTGTCGAGAAGCA----CCGC 1274
||||.|..||.||.||.|||.|.||||||.|.||| ||| |||.
BPUM_2903 791 AAGCATTAGAAGCGCTTCAAGCCGGGCATCTCTCG----GCACAGTCCGA 836
BSNT_04797___ 1275 ATTTATCCAGGTGTATCACGCCAAAGATGTGCCTG---------AGCTTC 1315
||.|||.|||.|.||.||.||.||.||||||||.| |||||
BPUM_2903 837 ATATATTCAGTTCTACCAAGCAAAGGATGTGCCAGATTTATTAAAGCTT- 885
BSNT_04797___ 1316 TGCGCTTGCTCCCGGTTGAGGATTTGAAGAA---ATTTTACAACTCCACG 1362
|||..||||| |||| |.| ||||
BPUM_2903 886 ---------------------ATTCCAAGAAAGGATTT----AGT-CACG 909
BSNT_04797___ 1363 CTTCA-------GAGCCTCGC--------TGAAAAACAGCAGGAGGATCA 1397
.|||| .|.|.||.| ||| |||.|| |||
BPUM_2903 910 TTTCACCAGATGCACCTTCACCCATTATATGA-----AGCTGG----TCA 950
BSNT_04797___ 1398 AAGCCTGCTTCATACGCTTTCCGTCTATTTAGAGACACACTGCCAAATTT 1447
||.|||.||.||.||..|.||.|||||||||||.||.||.|||||.||||
BPUM_2903 951 AAACCTCCTCCACACCATATCTGTCTATTTAGAAACGCATTGCCACATTT 1000
BSNT_04797___ 1448 CAGAGACGGCAAAGCGTCTGTACGTTCATCGCAATACGGTCATATACCGC 1497
||||.||.||.||.|||.|||...||||||||||.||||||||.||.||.
BPUM_2903 1001 CAGAAACAGCGAAACGTTTGTCTATTCATCGCAACACGGTCATTTATCGA 1050
BSNT_04797___ 1498 CTTGAAAAATGCGAAGAGCTTCTGGGTAAAAGCTTAAAAGATCCTGAA-- 1545
.|.|||||.||.||||||.|.||..|||..|||||||||||.||||||
BPUM_2903 1051 TTAGAAAAGTGTGAAGAGTTGCTTCGTATCAGCTTAAAAGACCCTGAAGT 1100
BSNT_04797___ 1546 -AC---AACGATGCGTTTGCGGCTTGCCTTACGTATGCAGCGGCTGA--- 1588
|| ||.|.|||||| |.||.||||||||.|| ..|||
BPUM_2903 1101 CACATTAAGGCTGCGTT------TAGCATTACGTATTCA---AATGATTC 1141
BSNT_04797___ 1589 --TCAGCTAA---------- 1596
|||.|..|
BPUM_2903 1142 TTTCACCCCATCCTGATTGA 1161
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