Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04797 and BPUM_2903

See Amino acid alignment / Visit BSNT_04797 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence dna-align/BSNT_04797___pucR.1.24716.seq
#    -bsequence dna-align/BPUM_2903.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04797___pucR-BPUM_2903.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04797___pucR-BPUM_2903.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04797___pucR
# 2: BPUM_2903
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1770
# Identity:     763/1770 (43.1%)
# Similarity:   763/1770 (43.1%)
# Gaps:         783/1770 (44.2%)
# Score: 1601.0
# 
#
#=======================================

BSNT_04797___      1 ATGAATATTTTTGATGTGATGAAAATACCGGCTTTTGAAAACG----CCA     46
                                       |||||        |||    |.|||    |||
BPUM_2903          1 ------------------ATGAA--------CTT----AGACGATAACCA     20

BSNT_04797___     47 ATTT--------------AATCGCTGGAAAAGCAGGAGGGGAAAGAGAGG     82
                     ||||              |||||||               |||||   |.
BPUM_2903         21 ATTTGAAACATTGCAAAAAATCGCT---------------GAAAG---GA     52

BSNT_04797___     83 TT---CAGCATGTCAATATG----------ATGGACG----CTCCGGATA    115
                     ||   ||.|.||||.||.||          ||||.||    |||.|.|..
BPUM_2903         53 TTCGCCACCCTGTCTATTTGTGTAACCAGCATGGGCGTCTTCTCTGCAAC    102

BSNT_04797___    116 TCGCAGACTTTTTGCATAAGAATGAATTGCTCGTCACCACC----GCCTA    161
                     |||||                          |.||||||.|    ||   
BPUM_2903        103 TCGCA--------------------------CATCACCAGCACGAGC---    123

BSNT_04797___    162 TCACCTGA-AGGATCACCCGCATCAATTATCTGAACTGATTCGGCAAATG    210
                        ||.|| .||||   .|||||      |||...||..|||        
BPUM_2903        124 ---CCAGATTGGAT---TCGCAT------TCTCCCCTTTTTC--------    153

BSNT_04797___    211 GCAAAACGCGGCTGCGCGGGCCTCGGCATTAAAACAAAGCGCTATCTGGA    260
                      ||||          ||.||.|.|..|||||           |.|.|.||
BPUM_2903        154 -CAAA----------GCAGGACACCCCATTA-----------TTTTTCGA    181

BSNT_04797___    261 ----AGATATCCCGAAGGAAATCATCGAACTGGCCGATTCATATGCGTTT    306
                         |||||   |||||.|||            ||.||||   ||..|||
BPUM_2903        182 TAATAGATA---CGAAGCAAA------------CCTATTC---TGTTTTT    213

BSNT_04797___    307 CCGATCATTGAACTTCCAGAACACATCCGCCTCGGCGATATTGTAAATGC    356
                     .||||                                             
BPUM_2903        214 TCGAT---------------------------------------------    218

BSNT_04797___    357 CACACTCAGCCACATTCTCGATATGCGTTCTAACGAGCTGCAGCAAGCCA    406
                                              ||.|||||                 
BPUM_2903        219 -------------------------CGATCTAA-----------------    226

BSNT_04797___    407 TTTACGCGCACAAAAAATTCACAAACCACATTATGAGCGGCAAGGGGCTG    456
                          .||||||||.|               ||||||             
BPUM_2903        227 -----ACGCACAAACA---------------TATGAG-------------    243

BSNT_04797___    457 CAATCCCTCCTCAAAAAGGT-GTCAGACC-TCCTTCA-GCTTCCCGTGCT    503
                                    .|.|| ||||..|| ||.|||| .|||||      
BPUM_2903        244 ---------------TATGTGGTCATCCCATCGTTCATTCTTCC------    272

BSNT_04797___    504 GCTGCTTGACCAGCATGCCAAAATGCTGTCCGCGTCTCATCAGATTTCAG    553
                        |||||      |||   |||..||    ||...||||||        
BPUM_2903        273 ---GCTTG------ATG---AAACACT----GCAAGTCATCA--------    298

BSNT_04797___    554 TTGAGACCGAAAAGCTGAAAGGCACCCTGAATACCGTATCCGGGCCATTT    603
                     ||||     |.||||.|.|   |||   |||      |||          
BPUM_2903        299 TTGA-----ACAAGCAGTA---CAC---GAA------ATC----------    321

BSNT_04797___    604 TTCACTTGTTTCTCTACAATCTCAGATCAGAAAACATATTCTGTCCTGCC    653
                      |||.|||            |.|..||.||..|  ||||.|||.||.|| 
BPUM_2903        322 -TCAATTG------------CGCGAATGAGGCA--ATATACTGCCCAGC-    355

BSNT_04797___    654 TATTTATAATCACGAAAAAAACTGCGGATACCTG-CTGATAC--------    694
                                       ||||.|| .|..|.|| |.||.||        
BPUM_2903        356 ------------------AAACGGC-CAAGCGTGCCAGAAACGAAGGGTT    386

BSNT_04797___    695 -CGGACATGGTCCAGGCCGGCGATAAAGGATTGATCCTC-----------    732
                      ||.|.|||            ||||.|||.|..|||.||           
BPUM_2903        387 TCGCAGATG------------GATAGAGGGTGCATCGTCTTCTCAGCAAG    424

BSNT_04797___    733 ACGATTGAACAAGCGGCCAACGTCATTTCCTTTGAACTGCTGAAGGA--A    780
                     |||| ||.|||....||.|| |||||||                |||  |
BPUM_2903        425 ACGA-TGCACACATTGCGAA-GTCATTT----------------GGATTA    456

BSNT_04797___    781 AATGCGCT-GA-AGCAGTTCAGCCGGCGGGCCCGCA-------ATGAGTT    821
                     ||||   | || |||||.|                |       |||| |.
BPUM_2903        457 AATG---TAGATAGCAGCT----------------ATCTATGTATGA-TC    486

BSNT_04797___    822 TTTCAGCAATTTTATTGAGCGGTCCTTTTCTTCAGATGACGAAATCAAAA    871
                     |.|||||       ||||    |||.|.||.|.|||..||          
BPUM_2903        487 TGTCAGC-------TTGA----TCCGTATCATGAGAACAC----------    515

BSNT_04797___    872 ACCGGGCGAAAGAATTCA--------AGCTGC-GCTGGGATCAAAAATAC    912
                                    |||        |||.|| .||  |||.|.|.| ||
BPUM_2903        516 ---------------TCATTTTTTAGAGCAGCAACT--GATGATAGA-AC    547

BSNT_04797___    913 ATGTGCATTGCCGGCAAACTCGATCGCAATGACGAATCAATCAGCTTTAC    962
                     |.|| |.|||                             |||.|||..||
BPUM_2903        548 AAGT-CGTTG-----------------------------ATCTGCTCGAC    567

BSNT_04797___    963 AGAAAATCAGCT-CGCTTCCGACAGCGTATTCGAATTTCTTGAAGGTGAA   1011
                     ||         | |.||||| ||     |.||...||||           
BPUM_2903        568 AG---------TGCACTTCC-AC-----ACTCTCCTTTC-----------    591

BSNT_04797___   1012 TTATCAGCCTTCCCGTTTCCGCCTCACTTCTTTATGAAAGGAAATGTCGG   1061
                            ||||||  |||         ||.||..|.|||||..||.|.|.
BPUM_2903        592 -------CCTTCC--TTT---------TTATTCGTCAAAGGGGATATGGT    623

BSNT_04797___   1062 CATTATTCTAATCGAGGCGACAGACAGCTG---------GAGTGAAATGC   1102
                     ||||.||.||||.||.|.|||.|.||..||         ||||||||  .
BPUM_2903        624 CATTGTTTTAATGGAAGAGACGGGCAATTGGTCAGAGATGAGTGAAA--A    671

BSNT_04797___   1103 ACGCCTCGGTGATCAGCTTTTTAG-AACAGTTTCAAACACAGGTCAGCGC   1151
                     ||.|||        ..||||||.| ||||..|.||.|.||..||.|||..
BPUM_2903        672 ACTCCT--------TTCTTTTTTGAAACAAATGCAGATACTCGTTAGCAT    713

BSNT_04797___   1152 TCAATTTAAACGAACCGTGTCCTTTG---------------------GCA   1180
                     .|||.|.||.|..|||.|.|||||||                     |||
BPUM_2903        714 ACAAGTGAATCACACCATTTCCTTTGGCGCGAGCTTGACTAGTTGTCGCA    763

BSNT_04797___   1181 TCAGCAATATCTGCCAAAAGCTCATTGATGTTCCCGACGCTTTCACA--G   1228
                     |||.|  .|||||.|          |||.|        |||   |||  |
BPUM_2903        764 TCACC--CATCTGTC----------TGAGG--------GCT---ACAGTG    790

BSNT_04797___   1229 AAGCTTCTGATGCTCTGCAATCGGGGCATTTGTCGAGAAGCA----CCGC   1274
                     ||||.|..||.||.||.|||.|.||||||.|.|||    |||    |||.
BPUM_2903        791 AAGCATTAGAAGCGCTTCAAGCCGGGCATCTCTCG----GCACAGTCCGA    836

BSNT_04797___   1275 ATTTATCCAGGTGTATCACGCCAAAGATGTGCCTG---------AGCTTC   1315
                     ||.|||.|||.|.||.||.||.||.||||||||.|         ||||| 
BPUM_2903        837 ATATATTCAGTTCTACCAAGCAAAGGATGTGCCAGATTTATTAAAGCTT-    885

BSNT_04797___   1316 TGCGCTTGCTCCCGGTTGAGGATTTGAAGAA---ATTTTACAACTCCACG   1362
                                          |||..|||||   ||||    |.| ||||
BPUM_2903        886 ---------------------ATTCCAAGAAAGGATTT----AGT-CACG    909

BSNT_04797___   1363 CTTCA-------GAGCCTCGC--------TGAAAAACAGCAGGAGGATCA   1397
                     .||||       .|.|.||.|        |||     |||.||    |||
BPUM_2903        910 TTTCACCAGATGCACCTTCACCCATTATATGA-----AGCTGG----TCA    950

BSNT_04797___   1398 AAGCCTGCTTCATACGCTTTCCGTCTATTTAGAGACACACTGCCAAATTT   1447
                     ||.|||.||.||.||..|.||.|||||||||||.||.||.|||||.||||
BPUM_2903        951 AAACCTCCTCCACACCATATCTGTCTATTTAGAAACGCATTGCCACATTT   1000

BSNT_04797___   1448 CAGAGACGGCAAAGCGTCTGTACGTTCATCGCAATACGGTCATATACCGC   1497
                     ||||.||.||.||.|||.|||...||||||||||.||||||||.||.||.
BPUM_2903       1001 CAGAAACAGCGAAACGTTTGTCTATTCATCGCAACACGGTCATTTATCGA   1050

BSNT_04797___   1498 CTTGAAAAATGCGAAGAGCTTCTGGGTAAAAGCTTAAAAGATCCTGAA--   1545
                     .|.|||||.||.||||||.|.||..|||..|||||||||||.||||||  
BPUM_2903       1051 TTAGAAAAGTGTGAAGAGTTGCTTCGTATCAGCTTAAAAGACCCTGAAGT   1100

BSNT_04797___   1546 -AC---AACGATGCGTTTGCGGCTTGCCTTACGTATGCAGCGGCTGA---   1588
                      ||   ||.|.||||||      |.||.||||||||.||   ..|||   
BPUM_2903       1101 CACATTAAGGCTGCGTT------TAGCATTACGTATTCA---AATGATTC   1141

BSNT_04797___   1589 --TCAGCTAA----------   1596
                       |||.|..|          
BPUM_2903       1142 TTTCACCCCATCCTGATTGA   1161


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