Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04787 and BPUM_2899

See DNA alignment / Visit BSNT_04787 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence pep-align/BSNT_04787___yunB.1.24716.seq
#    -bsequence pep-align/BPUM_2899___yunB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04787___yunB-BPUM_2899___yunB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04787___yunB-BPUM_2899___yunB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04787___yunB
# 2: BPUM_2899___yunB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 270
# Identity:     136/270 (50.4%)
# Similarity:   179/270 (66.3%)
# Gaps:          42/270 (15.6%)
# Score: 698.5
# 
#
#=======================================

BSNT_04787___      1 --------------MPFRYVMLLSVVFFILSTTVSLWMINGSIKPVLMDI     36
                                   :||||||||:::||:|||.:||:.||.||||.|:.|
BPUM_2899___y      1 MRMNRRYRPYKKGPLPFRYVMLLAILFFVLSTVISLFFINRSIKPTLIHI     50

BSNT_04787___     37 GEMETKRIATEVIQDSIEDYMSDSENMKDMFQMNSDENGNLTTIDFNTQV     86
                     .|:||:|||..:||.|::|:..|.||||||..||:.|||.:||||||.|.
BPUM_2899___y     51 AELETERIANHLIQYSVQDFAEDQENMKDMVVMNTSENGKVTTIDFNAQA    100

BSNT_04787___     87 VNSVKTKVTKQLQAHLKEMETHT--------------GHSGASENIMINI    122
                     .:.....:::.||.:|:::|...              ||.|    |:.||
BPUM_2899___y    101 TSKAMADLSRHLQKNLEDIEKGNFQKEAKEALKDQTDGHDG----IIYNI    146

BSNT_04787___    123 PLGQVTGNSLLGNLGPKIPVRFNLIGDAFTDVKTKIKPYGINNALIDISI    172
                     ||||.:||:|:.|||||:||||::|||..|||:..||||||||||||||:
BPUM_2899___y    147 PLGQASGNALIANLGPKVPVRFSVIGDPHTDVEKNIKPYGINNALIDISV    196

BSNT_04787___    173 FVEIKVKVIIPFASKTAVVTNNVPVSIKAVQGEVPQFYNGSGGSGVTPSV    222
                     .:|:||:|||||||:|.||.|:|||||:||||:||.:|||||.:...||:
BPUM_2899___y    197 LIEVKVRVIIPFASETIVVKNSVPVSIQAVQGDVPDYYNGSGTNSGAPSI    246

BSNT_04787___    223 QLPSSKEEDGADSKKEKSSK    242
                     .||..|      .|||    
BPUM_2899___y    247 VLPEKK------GKKE----    256


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.