Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04787 and BPUM_2899

See Amino acid alignment / Visit BSNT_04787 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence dna-align/BSNT_04787___yunB.1.24716.seq
#    -bsequence dna-align/BPUM_2899___yunB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04787___yunB-BPUM_2899___yunB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04787___yunB-BPUM_2899___yunB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04787___yunB
# 2: BPUM_2899___yunB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 858
# Identity:     471/858 (54.9%)
# Similarity:   471/858 (54.9%)
# Gaps:         216/858 (25.2%)
# Score: 1248.0
# 
#
#=======================================

BSNT_04787___      1 ------------------------------------------TTGCCTTT      8
                                                               |||||.||
BPUM_2899___y      1 TTGAGAATGAACCGCCGCTATCGCCCCTATAAAAAGGGCCCTTTGCCATT     50

BSNT_04787___      9 CCGTTACGTGATGCTCCTGTCCG-TTGTCTTTTTTATCCTGTCAACAACG     57
                     .||.|||||.|||||.|| |.|| |..|.||.|||.|.||.|||||  ||
BPUM_2899___y     51 TCGATACGTCATGCTGCT-TGCGATCTTATTCTTTGTGCTCTCAAC--CG     97

BSNT_04787___     58 --GTCAGCCTTTGGATGATCAATGGCTCGAT-----CAAACCTGTTTTAA    100
                       .||||.||.|...|.||.||..|.||.||     |||.||| |.||.|
BPUM_2899___y     98 TCATCAGTCTATTTTTTATTAACCGTTCCATTAAACCAACCCT-TATTCA    146

BSNT_04787___    101 TGGACATCGGCGAGATGGAAACGAAGCGTATAGCGACAGAGGTGATCCAG    150
                     |    ||.|..||..|.|||||..|||||||.||.|...|..||||.||.
BPUM_2899___y    147 T----ATTGCTGAATTAGAAACAGAGCGTATCGCCAATCATCTGATTCAA    192

BSNT_04787___    151 GATTCGATTGAGGACTATATGTCTGA----CAGTGAAAATATGAAAGATA    196
                     .||||..|..|.||||   |..|.||    ||| ||.||||||||.||||
BPUM_2899___y    193 TATTCCGTCCAAGACT---TTGCAGAAGATCAG-GAGAATATGAAGGATA    238

BSNT_04787___    197 TGTT--TCAAATGAATTCTGATGAAAACGGAAACTTAACGACAATCGATT    244
                     ||.|  ||  ||||||.|...|||.||||||||..|||||||.|||||||
BPUM_2899___y    239 TGGTGGTC--ATGAATACAAGTGAGAACGGAAAAGTAACGACCATCGATT    286

BSNT_04787___    245 TTAATACACAGG-----TTGTAAACAGTG---------------------    268
                     |||||.|.||.|     |.|.||.||.||                     
BPUM_2899___y    287 TTAATGCGCAAGCAACATCGAAAGCAATGGCTGACCTGTCACGTCATCTT    336

BSNT_04787___    269 --------------------TGAAAA-----------CAAAAGTGAC-AA    286
                                         ||||||           .|||||.|.| ||
BPUM_2899___y    337 CAAAAAAATTTAGAGGACATTGAAAAGGGGAACTTTCAAAAAGAGGCAAA    386

BSNT_04787___    287 AGCAGC--TTCAGGCTCATTTGAAAGAGATGGAAACCCATACCGGACACA    334
                     ||.|||  |..|||.||     |||.|||||||    |||..|||     
BPUM_2899___y    387 AGAAGCATTAAAGGATC-----AAACAGATGGA----CATGACGG-----    422

BSNT_04787___    335 GCGGCGCCAGTGAAAACATTATGAT-CAACATTCCGCTGGGACAGGTAAC    383
                                     |||||| || .|||||||||||.||.||.|.|.|
BPUM_2899___y    423 ----------------CATTAT-ATATAACATTCCGCTTGGGCAAGCATC    455

BSNT_04787___    384 CGGCAA--CAGCCTTCTTGGAAACCTCGGGCCGAAAATCCCGGTCCGGTT    431
                     |||.||  ||  |||.|.|..|||||.||.||.|||.|.||.|||||.||
BPUM_2899___y    456 CGGAAATGCA--CTTATCGCCAACCTAGGACCAAAAGTGCCTGTCCGCTT    503

BSNT_04787___    432 CAATTTAATCGGTGACGCTTTTACAGATGTCAAAACCAAAATCAAGCCGT    481
                     ||.|.|.||.||||||.|...|||.||.||..|||..||.||.|||||.|
BPUM_2899___y    504 CAGTGTCATTGGTGACCCGCATACGGACGTTGAAAAAAACATTAAGCCTT    553

BSNT_04787___    482 ATGGCATAAATAACGCACTT-ATTGATATCAGCATCTTTGTCGAAATTAA    530
                     ||||.||.|||||.|| ||| ||||||||.||..|..|..||||..|.||
BPUM_2899___y    554 ATGGTATCAATAATGC-CTTGATTGATATTAGTGTTCTAATCGAGGTCAA    602

BSNT_04787___    531 AGTGAAGGTCATCATTCCATTTGC--CAGCAAAACCGCTGTCGTCACAAA    578
                     .||||..||||||||.||.|||||  |.|  ||||...|||.||||.|||
BPUM_2899___y    603 GGTGAGAGTCATCATCCCGTTTGCATCTG--AAACAATTGTGGTCAAAAA    650

BSNT_04787___    579 TAATGTTCCTGTATCGATTAAAGCAGTGCAGGGCGAAGTGCCGCAGTTTT    628
                     |...|||||.||.||.||..||||.||.||.||.||.||.||..|.|.||
BPUM_2899___y    651 TTCAGTTCCCGTCTCCATCCAAGCCGTTCAAGGAGACGTACCAGATTATT    700

BSNT_04787___    629 ATAATGGAAGCGG--CG-GCTCGGGTGTCACGCCTTC---TGTCCAGCTC    672
                     |.|||||.|||||  || .|||.||   |.|.||.||   |||   .|||
BPUM_2899___y    701 ACAATGGGAGCGGAACGAACTCAGG---CGCTCCATCAATTGT---TCTC    744

BSNT_04787___    673 CC-GAGCAGCAAAGAAGAAGACGGTGCTGATTCAAAAAAAGAAAAAAGCA    721
                     || |||.|  ||||..||||                 ||||||.||    
BPUM_2899___y    745 CCAGAGAA--AAAGGGGAAG-----------------AAAGAATAA----    771

BSNT_04787___    722 GCAAATAA    729
                             
BPUM_2899___y    771 --------    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04787 and BPUM_2899

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
