Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04685 and BPUM_2854

See DNA alignment / Visit BSNT_04685 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence pep-align/BSNT_04685___yueD.1.24716.seq
#    -bsequence pep-align/BPUM_2854.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04685___yueD-BPUM_2854.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04685___yueD-BPUM_2854.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04685___yueD
# 2: BPUM_2854
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 254
# Identity:     117/254 (46.1%)
# Similarity:   157/254 (61.8%)
# Gaps:          35/254 (13.8%)
# Score: 574.5
# 
#
#=======================================

BSNT_04685___      1 MELYIITGASKGLGQAIALQALEKGHEVHALSRTKTDVSHKKLTQHQIDL     50
                                      ..:.|.:|..|:..:|:.:.:||.|||..|:||
BPUM_2854          1 -----------------MNRLLARGDHVYTAARSASPISHPKLTHTQVDL     33

BSNT_04685___     51 INLEEAEQQF-------ETLLSSIDSDRYSGITLINNAGMVTPIKRAGEA     93
                     .: |:|..|:       :||.::.|      |..:|||||||||||.|:.
BPUM_2854         34 TD-EKAAAQWLQDCLVPQTLAAADD------ILFVNNAGMVTPIKRVGQG     76

BSNT_04685___     94 SLDELQRHYQLNLTAPVLLSQLFTKRFASYSGKKTVVNITSGAAKNPYKG    143
                     ..|.|.:||.|||..|||||.:|.::..|::|||.:|:::||||||||||
BPUM_2854         77 GQDMLHQHYTLNLVIPVLLSHVFVQQTQSFNGKKMIVHLSSGAAKNPYKG    126

BSNT_04685___    144 WSAYCSSKAGLDMFTRTFGFEQEDEELPVNMISFSPGVMDTEMQAVIRSS    193
                     ||||||||||||||.||...||:||..|:|..|||||.:||:||..||.|
BPUM_2854        127 WSAYCSSKAGLDMFMRTLHEEQKDEAYPINTFSFSPGTIDTDMQGEIRKS    176

BSNT_04685___    194 SKKDFHHIERFRKLNETGSLRSPDFIAGTLLSLLEKGTENGRIYDIKEFL    243
                     ||:||..|:||::|.|||:|:|||.:|..||.||......|.:||.:|:.
BPUM_2854        177 SKQDFEQIDRFQQLYETGTLKSPDEVACILLDLLADDPAGGVVYDAREYG    226

BSNT_04685___    243 ----    243
                         
BPUM_2854        227 KKQS    230


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