Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04639 and BPUM_2817
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence pep-align/BSNT_04639___pbpD.1.24716.seq
# -bsequence pep-align/BPUM_2817___pbpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04639___pbpD-BPUM_2817___pbpD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04639___pbpD-BPUM_2817___pbpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04639___pbpD
# 2: BPUM_2817___pbpD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity: 423/634 (66.7%)
# Similarity: 512/634 (80.8%)
# Gaps: 13/634 ( 2.1%)
# Score: 2245.0
#
#
#=======================================
BSNT_04639___ 1 -----------MLRKIIGWILLLCIIPLFAFTVIASGKEVKQMKSLDQVL 39
|.|.||||:||..:|||||.|...|.:|...:|.:::||
BPUM_2817___p 1 MARKLKKVSDLMFRAIIGWLLLAALIPLFALTFYLSKEEAASVKPVNEVL 50
BSNT_04639___ 40 DKNINLKDISLVQNSYMYDRDGSLVSEIVSDHENRVLVPFNNIPEEVKQI 89
|:.|.|:.|...||||||||||||:|||||:.||||.|.::.||:.||::
BPUM_2817___p 51 DQKIKLEKIDFSQNSYMYDRDGSLISEIVSNDENRVFVTYDKIPDHVKEL 100
BSNT_04639___ 90 FLTSEDRHFYEHKGFDFMGMVRATASNVKDKKIDQGASTITQQLSRNLYL 139
||.||||:||:|||.||||:|||.|||||:..|.||||||||||||||||
BPUM_2817___p 101 FLRSEDRNFYDHKGIDFMGVVRALASNVKNHGISQGASTITQQLSRNLYL 150
BSNT_04639___ 140 SHERSFSRKLTELAYSYQLEKKYTKNEILEAYLNTIYFNNGVYGVGSAAQ 189
||||||:||.|||.|||:||:|::|:||||:|||||||:||||||||||.
BPUM_2817___p 151 SHERSFTRKFTELLYSYELERKFSKDEILESYLNTIYFSNGVYGVGSAAN 200
BSNT_04639___ 190 FYFSKPLKSLTVGEMAFICAIPNNPTLYDPLKHFDYTKSRQERLLKGLKD 239
:||.|||.|||:.:||||.|||||||||||||.|.:||.||||||..|:.
BPUM_2817___p 201 YYFDKPLSSLTLAQMAFISAIPNNPTLYDPLKQFKHTKKRQERLLGILEK 250
BSNT_04639___ 240 AGVITDKELKKAVKQKIKLDVEKREDKYPDYVSYVNDEFTQLVSESEGFD 289
.||||.|:.||||||||.|.|.::::.|||||:|.|:|||.|||:.|||.
BPUM_2817___p 251 DGVITKKQYKKAVKQKISLSVSEKKNLYPDYVTYANEEFTDLVSDQEGFT 300
BSNT_04639___ 290 KRLQKA-SGKQKEKIENELSARVSTLMKDGVKIYTALDPYMQNQVVAQMN 338
|||:|| :...|:.|:.|||.:||.|::|||||||||||.:|.:.|.|:|
BPUM_2817___p 301 KRLKKAKTDGAKKAIQKELSEKVSALLQDGVKIYTALDPSLQQRAVYQLN 350
BSNT_04639___ 339 SKLPYADVQGGAAVINHQTHQIIALSGGKNYQKYDFNRAYQAYRQPGSSI 388
::|||..|:||:|||||:||||:||:|||||:|:|||.||||.|||||:|
BPUM_2817___p 351 AQLPYQGVEGGSAVINHETHQIVALAGGKNYKKFDFNYAYQAQRQPGSAI 400
BSNT_04639___ 389 KPLLDYGPYIEQTGATASSTIDASKFCSKDYCPQNYNNRTYGTVTLDTAF 438
||||||||||:||||||||.|.|.||||..||||||:::|||||||:|||
BPUM_2817___p 401 KPLLDYGPYIDQTGATASSKISAGKFCSSGYCPQNYSHKTYGTVTLETAF 450
BSNT_04639___ 439 KNSYNTPAIRMLDRVGIQKAFSYIEPYHFAKLVDSDYLLPAALGGFTNGM 488
|||||||||||||.||::|.|||:|.:.|..:|..||.||:||||||.|.
BPUM_2817___p 451 KNSYNTPAIRMLDTVGVKKGFSYLEKFSFEHIVADDYRLPSALGGFTKGF 500
BSNT_04639___ 489 TPLEMTKAYTTFGNSGSYTPSHAITKVTDLKGKTLYKWNDKATQIFSVRT 538
:|||:|.|||.|||.|:||.||:|||||||.|||||||.:...|::|.||
BPUM_2817___p 501 SPLEITDAYTVFGNQGAYTQSHSITKVTDLNGKTLYKWKESPKQVYSQRT 550
BSNT_04639___ 539 NMQLKKLMSSVVKSGTGKKAYFNAPYIGGKTGTSNDYHDMWFVGLTDTYT 588
|..::||::|||||||||||.|:||||||||||||||.|:|||||||.||
BPUM_2817___p 551 NETMRKLLASVVKSGTGKKANFSAPYIGGKTGTSNDYKDIWFVGLTDQYT 600
BSNT_04639___ 589 MGVWVGKDTPTSVEYLHSISPQLSIWKGTLQAAY 622
||||||:|..| ||.::|.||.|.|||.|:|.|.
BPUM_2817___p 601 MGVWVGRDRGT-VESIYSSSPHLRIWKNTMQYAR 633
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