Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04639 and BPUM_2817
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_04639___pbpD.1.24716.seq
# -bsequence dna-align/BPUM_2817___pbpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04639___pbpD-BPUM_2817___pbpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04639___pbpD-BPUM_2817___pbpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04639___pbpD
# 2: BPUM_2817___pbpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2016
# Identity: 1329/2016 (65.9%)
# Similarity: 1329/2016 (65.9%)
# Gaps: 261/2016 (12.9%)
# Score: 4105.5
#
#
#=======================================
BSNT_04639___ 1 ---------------------------------ATGTTACGAAAAATAAT 17
|||||.||...||||||
BPUM_2817___p 1 ATGGCTAGAAAATTGAAGAAAGTGAGTGACCTCATGTTTCGTGCAATAAT 50
BSNT_04639___ 18 CGGATGG--ATT--TTGCTCCTTTGCATAATCCCATTGTTTGC-----AT 58
.||.||| ||| |||||.| |.|.||.||||||||||| .|
BPUM_2817___p 51 TGGTTGGTTATTACTTGCTGC----CCTCATTCCATTGTTTGCTCTGACT 96
BSNT_04639___ 59 TTACAGTTATCGCT-TCCGGAAAAGAAGTAAAA----CAA--ATGAAGTC 101
|| |||| || || |||.|||| || ||| .|||||
BPUM_2817___p 97 TT----TTAT--CTATC---AAAGGAAG---AAGCTGCAAGTGTGAAG-- 132
BSNT_04639___ 102 CCTG-GATC-AGGTGCTTGATAAAAATATTAATCTG--AAAGATATCAGC 147
|||| ||.| |.|||||||||.||||.||.||.||| ||||||| .
BPUM_2817___p 133 CCTGTGAACGAAGTGCTTGATCAAAAAATCAAGCTGGAAAAGATA----G 178
BSNT_04639___ 148 CTTGTT--CAGAACAGCTACATGTATGACAGGGACGGCTCCCTTGTCTCG 195
.||.|| ||.|||||.||.||||||||..||||.||.||.||..||||.
BPUM_2817___p 179 ATTTTTCCCAAAACAGTTATATGTATGATCGGGATGGTTCTCTCATCTCC 228
BSNT_04639___ 196 GAAATCG--TCAGCGACCACGAAAACCGTGTGCTCGTTCCATTTAACAAC 243
||.|||| ||| .||.|.||.|||||.||..||||..|.|.|.|.||.
BPUM_2817___p 229 GAGATCGTATCA--AACGATGAGAACCGCGTATTCGTCACGTATGATAAA 276
BSNT_04639___ 244 ATTCCCGAGGAAGTCAAACAGATTTTCTTAACATCTGAGGACCGCCATTT 293
||.||.||..|.||.||..||.|.|||.|....||.|||||.||..|.||
BPUM_2817___p 277 ATCCCTGATCATGTGAAGGAGCTGTTCCTCCGCTCAGAGGATCGGAACTT 326
BSNT_04639___ 294 TTACGAGCATAAAGGCTTTGACTTTATGGGAATGGTGCGGGCTACTGCTT 343
|||.||.|||||||||.|||||||||||||..|.|||||.||...|||||
BPUM_2817___p 327 TTATGACCATAAAGGCATTGACTTTATGGGGGTTGTGCGTGCCCTTGCTT 376
BSNT_04639___ 344 CTAACGTAAAAGACAAGAAAATTGAC------CAGGGTGCCAGCACCATC 387
|.||.||.|||.||.| ||.| ||.||.||.||.||.|||
BPUM_2817___p 377 CAAATGTGAAAAACCA------TGGCATCAGTCAAGGCGCAAGTACGATC 420
BSNT_04639___ 388 ACACAGCAGCTTTCAAGAAACTTATATTTGAGCCACGAACGCTCCTTCAG 437
||||||||..|.||..|.||.||||||||.|||||.|||||.||.||||.
BPUM_2817___p 421 ACACAGCAATTATCTCGTAATTTATATTTAAGCCATGAACGTTCGTTCAC 470
BSNT_04639___ 438 CCGCAAGCTGACAGAGCTCGC-GTATTCCTATCAGCTGGAGAAAAAATAT 486
|||.|||.|.|||||||| || .||||||||..|..|.|||...||||..
BPUM_2817___p 471 CCGAAAGTTTACAGAGCT-GCTCTATTCCTACGAATTAGAGCGGAAATTC 519
BSNT_04639___ 487 ACGAAAAATGAAATTCTTG-AAGCTTACTTAAATACCATTTATTTTAACA 535
.|||||.|||||||.||.| |||| ||.||||||||.||||||||.|..|
BPUM_2817___p 520 TCGAAAGATGAAATACTCGAAAGC-TATTTAAATACGATTTATTTCAGTA 568
BSNT_04639___ 536 ATGGTGTTTATGGCGTCGGTTCAGCAGCTCAATT-CTATTTCAGCAAACC 584
||||||||||.||.||||||||.||.||| |||| ||||||....||.||
BPUM_2817___p 569 ATGGTGTTTACGGTGTCGGTTCTGCGGCT-AATTACTATTTTGATAAGCC 617
BSNT_04639___ 585 GCTGAAATCTCTCACAGTGGGAGAAATGGCTTTTATCTGTGCTATACCTA 634
|||.|..|||.|.||..|.|.|.|.|||||.|||||||.|||.||.||.|
BPUM_2817___p 618 GCTTAGTTCTTTAACGCTTGCACAGATGGCATTTATCTCTGCGATTCCAA 667
BSNT_04639___ 635 ATAATCCTACATTATATGATCCTCTCAAGCATTTTGACTACACGAA-AAG 683
|.||.||.|||.|.||||||||..|.|||||.||..|..||||.|| |||
BPUM_2817___p 668 ACAACCCAACACTGTATGATCCATTGAAGCAATTCAAACACACAAAGAAG 717
BSNT_04639___ 684 CCGTCAAGAACGTTTGCTTAAAGGGCTA--------AAAGATGCCGGGGT 725
||.||||||||..|.||| |.|| ||||| |||.||
BPUM_2817___p 718 -CGCCAAGAACGACTACTT-----GGTATTTTAGAGAAAGA---CGGTGT 758
BSNT_04639___ 726 CATTACGGACAAAGAGC---TGAAAAAAGCCGTAAAACAAAAAATCAAAC 772
.||.|| ||||.||| ..|||||||||||.|||||||||||||..|
BPUM_2817___p 759 GATCAC---CAAAAAGCAATACAAAAAAGCCGTCAAACAAAAAATCAGCC 805
BSNT_04639___ 773 TGGATGTTGAAAAAAGAGAAGACAAA----TATCCTGACTACGTTTCCTA 818
||...|| ||..||.||||.||| ||.||||||||.||..|.||
BPUM_2817___p 806 TGTCCGT----AAGTGAAAAGAAAAACCTTTACCCTGACTATGTGACATA 851
BSNT_04639___ 819 CGTCAATGATGAATTCACTCAGCTGGTGTCTGAATCA-GAAGGCTTTGAT 867
.|.||||||.|||||.||..|.||.|||||.| |||| |||||||||...
BPUM_2817___p 852 TGCCAATGAGGAATTTACCGATCTTGTGTCAG-ATCAGGAAGGCTTTACA 900
BSNT_04639___ 868 AAACGCCTTCAA-AAAGCATCAGGAAAACAAA------AAGAAAAG--AT 908
||||| |||.|| ||||| |||||||.| ||.||||| ||
BPUM_2817___p 901 AAACG-CTTGAAGAAAGC-----GAAAACAGATGGTGCAAAAAAAGCCAT 944
BSNT_04639___ 909 CGAAAACGAGCTGTCCGCAAGAGTCAGCACGCTGATGAAAGACGGCGTGA 958
..||||.||..|.||.|.||..||.||..|.|||.|..||||.||.||.|
BPUM_2817___p 945 TCAAAAAGAATTATCTGAAAAGGTTAGTGCCCTGCTTCAAGATGGTGTCA 994
BSNT_04639___ 959 AAATTTATACTGCACTTGA----TCCGTACATGCAA---------AATCA 995
||||||||||.|||||||| |||.|||| |||| .||||
BPUM_2817___p 995 AAATTTATACGGCACTTGATCCTTCCTTACA-GCAACGAGCCGTCTATCA 1043
BSNT_04639___ 996 AGTTGTGGCACAAATG---AATT------CCAAGCTCCCGTATGCGGACG 1036
..|| |||| |||| |||||.| |
BPUM_2817___p 1044 GCTT--------AATGCGCAATTACCTTACCAAGGT-------------G 1072
BSNT_04639___ 1037 TACAGGGCGGAGCGGCTGTGATTAATCACCAGACGCATCAAATCATCGCT 1086
||.|.||||||.|.||.||.||||||||..|.|||||||||||..||||.
BPUM_2817___p 1073 TAGAAGGCGGATCAGCGGTCATTAATCATGAAACGCATCAAATAGTCGCA 1122
BSNT_04639___ 1087 CTATCCGGCGGGAAAAACTATCAAAAATATGACTTTAACCGCGCCTACCA 1136
||..|.|||||.||.||||||.||||||.|||.||.|||..||||||.||
BPUM_2817___p 1123 CTTGCTGGCGGAAAGAACTATAAAAAATTTGATTTCAACTACGCCTATCA 1172
BSNT_04639___ 1137 GGCGTACAGGCAGCCGGGTTCATCCATTAAGCCGCTTCTTGATTACGGCC 1186
.||..|.||.|||||.|||||..|.||||||||||||.|.||.||.||.|
BPUM_2817___p 1173 AGCACAAAGACAGCCTGGTTCTGCGATTAAGCCGCTTTTAGACTATGGTC 1222
BSNT_04639___ 1187 CTTATATTGAACAGACCGGCGCGACAG---CAAGCAGCACAATTGA-TGC 1232
|||||||.||.||.|||||.||.|||| |||||| ||.|.| |||
BPUM_2817___p 1223 CTTATATCGACCAAACCGGTGCAACAGCTTCAAGCA----AAATCAGTGC 1268
BSNT_04639___ 1233 CAGCAAGTTTTGCAGCAAAGACTACTGTCCGCAAAACTACAATAACCGCA 1282
|.|||||||||||||||..|..|||||||||||.|||||.|.|.||...|
BPUM_2817___p 1269 CGGCAAGTTTTGCAGCAGCGGATACTGTCCGCAGAACTATAGTCACAAAA 1318
BSNT_04639___ 1283 CTTACGGCACAGTGACGCTTGATACGGCGTTTAAAAATTCATATAATACC 1332
|.|||||.|||||.||.|||||.||.||.|||||.||.||.||.|||||.
BPUM_2817___p 1319 CATACGGAACAGTCACACTTGAAACAGCCTTTAAGAACTCTTACAATACT 1368
BSNT_04639___ 1333 CCGGCTATTAGAATGCTCGACCGCGTCGGCATC-CAAAAGGCATTCAGTT 1381
||.||.||..|||||||.||....||.||..|| .||||||| ||.||.|
BPUM_2817___p 1369 CCTGCGATCCGAATGCTGGATACAGTTGGTGTCAAAAAAGGC-TTTAGCT 1417
BSNT_04639___ 1382 ATATTGAGCCGTA-----TCATTTTGCCAAACTTGTCGACAG----TGAC 1422
|..|.||| | ||||| |.|||.|.|||.| | |||.
BPUM_2817___p 1418 ACTTAGAG----AAATTCTCATT----CGAACATATCGTC-GCGGATGAT 1458
BSNT_04639___ 1423 TATCTTCTTCCGGCGGCGCTTGGCGGATTTACAAACGGCATGACGCCTCT 1472
||||..|||||..|.||.|||||.||||||||.||.|||.|..||||.||
BPUM_2817___p 1459 TATCGCCTTCCTTCTGCACTTGGTGGATTTACGAAGGGCTTCTCGCCGCT 1508
BSNT_04639___ 1473 TGAGATGACAAAGGCTTATA-CGACATTCGGCAA-CAGCGGAAGC-TATA 1519
.||.||.|||.|.||.|||| ||.| ||.||.|| || .|.||| ||.|
BPUM_2817___p 1509 AGAAATAACAGACGCATATACCGTC-TTTGGTAATCA--AGGAGCTTACA 1555
BSNT_04639___ 1520 CGCCGAGCCATGCGATTACAAAGGTGACAGACCTAAAAGGAAAAACGCTT 1569
|||..||.|||.|.||.||||||||.||||||.||||.||.||.||.|||
BPUM_2817___p 1556 CGCAAAGTCATTCAATCACAAAGGTAACAGACTTAAATGGTAAGACCCTT 1605
BSNT_04639___ 1570 TATAAATGGAATGATAAAGCGACTCAA----ATATTCAGCGTCCGCACGA 1615
||.||.|||||.||...|.|||..||| ||..||||||..|..|.||
BPUM_2817___p 1606 TACAAGTGGAAAGAATCACCGAAGCAAGTGTATTCTCAGCGGACAAATGA 1655
BSNT_04639___ 1616 -AC-ATGCAGCTGAAAAAACTGATGTCGTCCGTTGTGAAAAGCGGAACAG 1663
|| |||| ..|||.||.|..|.||.|||||.||||||||.||||
BPUM_2817___p 1656 GACTATGC------GTAAATTGCTTGCCTCTGTTGTAAAAAGCGGGACAG 1699
BSNT_04639___ 1664 GGAAAAAAGCATATTTCAATGCGCCTTACATCGGCGGTAAAACCGGAACA 1713
||||||||||..||||||.|||.|||||||||||.||||||||.||.|||
BPUM_2817___p 1700 GGAAAAAAGCGAATTTCAGTGCCCCTTACATCGGTGGTAAAACAGGGACA 1749
BSNT_04639___ 1714 TCAAATGATTATCACGATATGTGGTTTGTCGGCCTGACTGATACGTATAC 1763
||.|||||.||..|.||.||.|||||||||||.||.||.|||...|||||
BPUM_2817___p 1750 TCCAATGACTACAAAGACATTTGGTTTGTCGGACTAACAGATCAATATAC 1799
BSNT_04639___ 1764 AATGGGTGTCTGGGTCGGAA-------AGGACACACCGACCAGCGTTGAA 1806
|||||||||.|||||.|||| |||| |..||||||
BPUM_2817___p 1800 AATGGGTGTATGGGTTGGAAGAGATAGAGGA----------ACGGTTGAA 1839
BSNT_04639___ 1807 TATCTTCACAGCATC-AGCCCTCAGCTTTC-CATCTGGAAAGGAACGCTG 1854
|.|.||.||||| || ||.||.|| |||.| .||.||||||...|||.||
BPUM_2817___p 1840 TCTATTTACAGC-TCAAGTCCGCA-CTTACGTATTTGGAAAAATACGATG 1887
BSNT_04639___ 1855 CAA-GCGGCTTATTAA 1869
||| .||.|..||.|
BPUM_2817___p 1888 CAATACGCCAGATAA- 1902
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