Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03885 and BPUM_2612

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence pep-align/BSNT_03885___yrdC.1.24716.seq
#    -bsequence pep-align/BPUM_2612___yrdC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03885___yrdC-BPUM_2612___yrdC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03885___yrdC-BPUM_2612___yrdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03885___yrdC
# 2: BPUM_2612___yrdC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 188
# Identity:     132/188 (70.2%)
# Similarity:   158/188 (84.0%)
# Gaps:           1/188 ( 0.5%)
# Score: 716.0
# 
#
#=======================================

BSNT_03885___      1 MEEKKKALIIVDVQKAFDDKKWGERNNVKAEENISKILKLWREKGWTVIY     50
                     |:..:||||||||||||:.:|||||||::||.|||::|:.||||||.||:
BPUM_2612___y      1 MQTSQKALIIVDVQKAFEHEKWGERNNLEAENNISQLLRFWREKGWKVIH     50

BSNT_03885___     51 IQHTSDKPHSLFHPKNEGFAIKEIVKPMDEEVIITKTVNSSFIGTNLEEF    100
                     ||||:|.|.|||||.|||...|:|.:|::||.:|.|.||||||||||||.
BPUM_2612___y     51 IQHTADNPDSLFHPANEGHLFKDIARPLEEETVIQKKVNSSFIGTNLEEQ    100

BSNT_03885___    101 LKLNEITTVVITGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGMRDQN    150
                     |:.|.:.||||.|||||||||||||||||||||||||||||||||:.||.
BPUM_2612___y    101 LRSNHMDTVVIAGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGLTDQT    150

BSNT_03885___    151 DTYYDAATIHNISLATLHDEFATILTTDQLINDFIKTH    188
                     .||:|..|||.:|||||||||||:|||:|||.::.|: 
BPUM_2612___y    151 GTYFDPETIHRLSLATLHDEFATVLTTEQLITNWAKS-    187


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