Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03885 and BPUM_2612

See Amino acid alignment / Visit BSNT_03885 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence dna-align/BSNT_03885___yrdC.1.24716.seq
#    -bsequence dna-align/BPUM_2612___yrdC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03885___yrdC-BPUM_2612___yrdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03885___yrdC-BPUM_2612___yrdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03885___yrdC
# 2: BPUM_2612___yrdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 586
# Identity:     392/586 (66.9%)
# Similarity:   392/586 (66.9%)
# Gaps:          41/586 ( 7.0%)
# Score: 1238.0
# 
#
#=======================================

BSNT_03885___      1 GTGGAAGAAAAGA---AAAAAGCTTTAATCATTGTGGATGTACAAAAAGC     47
                     |||   .|||.||   ||||.|||||.||||||||.||||||||.||.||
BPUM_2612___y      1 GTG---CAAACGAGTCAAAAGGCTTTGATCATTGTTGATGTACAGAAGGC     47

BSNT_03885___     48 CTTTGATGATAAAAAATGGGGGGAACGGAATAACGTAAAGGCGGAAGAA-     96
                     .||.||..||.||||.|||||.|||||.|||||..||.||||.| |||| 
BPUM_2612___y     48 GTTCGAGCATGAAAAGTGGGGCGAACGCAATAATTTAGAGGCAG-AGAAT     96

BSNT_03885___     97 AACATTAGTAAAATACTAAAATTATGGAGAGAAAAAGGATGGACAGTCAT    146
                     ||.||.||..|..||.|.|..||.||||||||.|||||.||||.||||||
BPUM_2612___y     97 AATATCAGCCAGTTATTGAGGTTTTGGAGAGAGAAAGGCTGGAAAGTCAT    146

BSNT_03885___    147 ATACATACAACACACTTCTGATAAACCTCATTCTTTATTCCATCCAAAGA    196
                     ..|.||.||.||.||..|.||.||.||..|.|||||.||.||.||....|
BPUM_2612___y    147 TCATATTCAGCATACAGCCGACAATCCAGACTCTTTGTTTCACCCGGCAA    196

BSNT_03885___    197 ATGAAGG--GTTTGCGATAAAGGAAATAGTTAAGCCTATGGATGAAGAA-    243
                     |||||||  .|||  |.|.||.||.||.|..|..||..|.||.|||||| 
BPUM_2612___y    197 ATGAAGGACATTT--GTTCAAAGATATTGCCAGACCGTTAGAGGAAGAAA    244

BSNT_03885___    244 --GTCATTATAACC--AAGACAGTAAATAGCAGCTTTATTGGTACGAATT    289
                       ||.||     ||  ||||.|||.||.||||||||.|||||||||||.|
BPUM_2612___y    245 CGGTGAT-----CCAAAAGAAAGTGAACAGCAGCTTCATTGGTACGAACT    289

BSNT_03885___    290 TAGAAGAATTCTTAAAATTAAATGAAATAACCACTGTAGTCATAACTGGT    339
                     |.||||||....|||.||.|||..|.||...|||.||.||.||..|.||.
BPUM_2612___y    290 TGGAAGAACAACTAAGATCAAACCATATGGACACGGTCGTGATCGCAGGG    339

BSNT_03885___    340 TTAACCACGCCTCACTGTGTATCAACCACCACAAGAATGAGTGGTAATTT    389
                     .|.||.||.||.||.||||||||.||.||||||||||||||.||.|||.|
BPUM_2612___y    340 CTCACAACACCGCATTGTGTATCCACAACCACAAGAATGAGCGGAAATCT    389

BSNT_03885___    390 AGGGTTTGATACATACCTGATTTCAGATGCAACAGCAGCCTTCGGAATGA    439
                     .||.||||||||.||.||||||||.||.||||||||.|||||.||..|.|
BPUM_2612___y    390 TGGCTTTGATACGTATCTGATTTCGGACGCAACAGCTGCCTTTGGGCTAA    439

BSNT_03885___    440 GAGACCAAAATGATACATATTATGATGCGGCGACTATTCATAATATATCT    489
                     .|||.||||..|.||||||||.|||..|.|..||.||.|||....|.||.
BPUM_2612___y    440 CAGATCAAACCGGTACATATTTTGACCCAGAAACAATCCATCGGCTCTCG    489

BSNT_03885___    490 CTAGCTACATTGCATGATGAATTTGCCACAATATTGACAACTGATCAATT    539
                     ||.||.|||.|.||||||||||||||.||..|..|||||||.||.|||.|
BPUM_2612___y    490 CTTGCCACACTCCATGATGAATTTGCGACTGTGCTGACAACAGAGCAACT    539

BSNT_03885___    540 AATAAATGATT--------TTATAAAAACTCACTGA    567
                     .||.|...|||        |.||||           
BPUM_2612___y    540 CATCACAAATTGGGCAAAATCATAA-----------    564


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