Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04220 and BPUM_2536

See DNA alignment / Visit BSNT_04220 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence pep-align/BSNT_04220___lytS.1.24716.seq
#    -bsequence pep-align/BPUM_2536___lytS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04220___lytS-BPUM_2536___lytS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04220___lytS-BPUM_2536___lytS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04220___lytS
# 2: BPUM_2536___lytS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 593
# Identity:     413/593 (69.6%)
# Similarity:   492/593 (83.0%)
# Gaps:           8/593 ( 1.3%)
# Score: 2116.5
# 
#
#=======================================

BSNT_04220___      1 MIHLMIMMLERVGIIVILGFILAHTKLFRQALQNQDGYKGKAILISIFSL     50
                     |:||:|||:|||||||||||:|||.|.||..|.:.:|::.||:|:.||:.
BPUM_2536___l      1 MLHLIIMMIERVGIIVILGFVLAHVKGFRNLLLHNEGFRKKAVLVFIFAS     50

BSNT_04220___     51 FSIISNYTGIEIQRNMIVNNDWVFTIDPSGSIANTRILGVEIGGLLGGPF    100
                     |||||||||||||:.|::|:::.:.:..|.|||||||:|:|:|||:||||
BPUM_2536___l     51 FSIISNYTGIEIQQQMVMNHEFSYHLGSSSSIANTRIMGIEMGGLIGGPF    100

BSNT_04220___    101 VGAGIGILAGLHRFSLGGSTALSCAVSSILAGVLAGLIGRYFTKRYRMPT    150
                     ||.|.|:|||:||:|||||||||||:|||||||:||.:|..|.::.||.|
BPUM_2536___l    101 VGIGAGLLAGIHRYSLGGSTALSCAISSILAGVIAGYVGSRFKRKNRMVT    150

BSNT_04220___    151 PRIAALVGIGMESLQMIIILLMAKPFSDAWELVSMIGIPMILINGTGSFI    200
                     ||.|||.|:.||||||:||||.||||:|||.|||:|.:|||.:||.||||
BPUM_2536___l    151 PRQAALFGVAMESLQMVIILLFAKPFADAWGLVSIIALPMIFVNGIGSFI    200

BSNT_04220___    201 FLSIIQAIIRKEEQARALETHRVLTIADQTLPFFRQGLNENSCKSVAAII    250
                     ||||:|::||:||||:|::||||.:|||||||||||||||.||||||.||
BPUM_2536___l    201 FLSILQSVIRQEEQAKAMQTHRVFSIADQTLPFFRQGLNEQSCKSVAEII    250

BSNT_04220___    251 HKLTGTDAVSLTDKEKILAHVGAGMDHHIPSKSLITGLSKKVIKTGHIMK    300
                     |:||.||||||||.||||||||.|.|||||||||||||||:|:.:|.|||
BPUM_2536___l    251 HRLTETDAVSLTDTEKILAHVGDGTDHHIPSKSLITGLSKQVLMSGKIMK    300

BSNT_04220___    301 AISQEEIECTHAECPLHAAIVLPLTSNGNTIGTLKMYFKSPAGLSQVEEE    350
                     |.|::||.|:...|||.|||||||||||.|||||||||.||.|||:||||
BPUM_2536___l    301 AHSKDEINCSVPHCPLQAAIVLPLTSNGQTIGTLKMYFNSPVGLSRVEEE    350

BSNT_04220___    351 LAEGLAMLFSTQLELGEAELQSKLLKDAEIKALQAQVNPHFLFNAINTIS    400
                     |||||||||||||||||||.||:|||||||||||||||||||||||||||
BPUM_2536___l    351 LAEGLAMLFSTQLELGEAETQSRLLKDAEIKALQAQVNPHFLFNAINTIS    400

BSNT_04220___    401 ALCRTDVEKTRKLLLQLSVYFRSNLQGARQLLIPLSKELNHLNAYLSLEQ    450
                     .||||:||..||||||||:||||||||||||||||.||:.|:.|||||||
BPUM_2536___l    401 VLCRTNVEMARKLLLQLSIYFRSNLQGARQLLIPLHKEIQHVEAYLSLEQ    450

BSNT_04220___    451 ARFPGKYKIELNIDSRLEQIEIPPFVLQVLVENALRHAFPKKQDMCKVTV    500
                     ||||.||.:...|:..|||:.|||||||||||||:||||||.|..|:|.|
BPUM_2536___l    451 ARFPNKYHVTFQIEKELEQVMIPPFVLQVLVENAVRHAFPKHQTSCEVIV    500

BSNT_04220___    501 CVLSDDASVYMKVADNGRGIPPDVLPELGKKPFPSKEGTGTALYNLNQRL    550
                     ..:..|..|.|||.|||:||..|.:.:|.|.|..|||||||||:||:|||
BPUM_2536___l    501 SAVMKDGHVNMKVTDNGQGIENDKMAQLLKAPVESKEGTGTALFNLDQRL    550

BSNT_04220___    551 IGLFGQQAALHISSEVHKGTEVSFQVPMQQMKEGEEHAQGVNS    593
                     .|:||:||||.|.|.  :||::||::||..:|:.:..      
BPUM_2536___l    551 RGIFGRQAALSIHSS--QGTDISFRIPMDYVKKDDFR------    585


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.