Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04220 and BPUM_2536
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_04220___lytS.1.24716.seq
# -bsequence dna-align/BPUM_2536___lytS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04220___lytS-BPUM_2536___lytS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04220___lytS-BPUM_2536___lytS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04220___lytS
# 2: BPUM_2536___lytS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1871
# Identity: 1239/1871 (66.2%)
# Similarity: 1239/1871 (66.2%)
# Gaps: 202/1871 (10.8%)
# Score: 3699.5
#
#
#=======================================
BSNT_04220___ 1 ATGATTCATTTAATGATTATGATGCTGGAGAGAGTGGGGATTATTGTTAT 50
.||.||||||||||.|||||||||.|.|||.|.||.|||||.||.|||||
BPUM_2536___l 1 TTGCTTCATTTAATTATTATGATGATCGAGCGTGTCGGGATCATCGTTAT 50
BSNT_04220___ 51 ATTAGGGTTCATTCTCGCCCATACGAA--ACTTTTCAGACAAGCT----C 94
.||||||||..|.||.||||||..||| .|||| ..|||.|| |
BPUM_2536___l 51 TTTAGGGTTTGTGCTTGCCCATGTGAAGGGCTTT---CGCAATCTATTGC 97
BSNT_04220___ 95 TTCAGAATCAGGACGGCTAT--AAAGGAAAAGCGATTTTAATTTCTATTT 142
||||.||| ||.||.|.| ||| |||.||..|..|..|.|.|||||
BPUM_2536___l 98 TTCATAAT---GAAGGGTTTCGAAA--AAAGGCAGTCCTTGTCTTTATTT 142
BSNT_04220___ 143 TTTC-TCTTTTCAGCATCATCAGCAATTATACAGGCATCGAAATTCAAAG 191
||.| |||||| ||.||.|||||||||||.|||||.||.|||||.| ||
BPUM_2536___l 143 TTGCTTCTTTT-AGTATTATCAGCAATTACACAGGAATTGAAATCC--AG 189
BSNT_04220___ 192 AA--ATATGATTGTAAACAATGACTGGGTGTTTACGATAGATC------C 233
.| |.|||.|..|.|||.||||.| |||.|.|| .||| |
BPUM_2536___l 190 CAGCAGATGGTCATGAACCATGAGT-----TTTCCTAT-CATCTCGGCTC 233
BSNT_04220___ 234 ATCAGGCTCTATCGCGAATACCCGTATTTTGGGCGTGGAAATCGGGGGCC 283
.|||.||||.||.||.|||||..|.||..||||..|.|||||.||.||..
BPUM_2536___l 234 GTCAAGCTCGATTGCCAATACGAGAATCATGGGGATCGAAATGGGCGGAT 283
BSNT_04220___ 284 TTCTCGGAGGTCCGTTTGTAGGGGCCGGGATCGGCATA---CTT---GCG 327
|..|.|||||.|||||||| .||.||.|||..| ||| ||.
BPUM_2536___l 284 TAATAGGAGGGCCGTTTGT------TGGTATTGGCGCAGGGCTTTTAGCT 327
BSNT_04220___ 328 GGCCTGCATCGTTTTTCACTCGGTGGCAGCACGGCTTTAAGCTGTGCCGT 377
||..|.||.||||.||||.|.||.||.||||||||..|.||||||||..|
BPUM_2536___l 328 GGTATTCACCGTTATTCATTAGGAGGAAGCACGGCACTCAGCTGTGCGAT 377
BSNT_04220___ 378 ATCATCTATTTTAGCGGGTGTTCTTGCAGGCT-TGATCGGCAGGTA--TT 424
.||.||.||||||||.|||||..||||||||| || ||||.| ||| ||
BPUM_2536___l 378 TTCTTCGATTTTAGCCGGTGTGATTGCAGGCTATG-TCGGGA-GTAGGTT 425
BSNT_04220___ 425 TTACGAAGC----GATATCGAATGCCGACACCGCGCATCGCCGCTCTTGT 470
| |||| || ||||||||..||||||.|||...|||||.|||.|
BPUM_2536___l 426 T----AAGCGGAAGA-ATCGAATGGTGACACCTCGCCAAGCCGCACTTTT 470
BSNT_04220___ 471 GGGAATCGGC-ATGGAGTCACTGCAAATGATCATTATTTTGCTGATGGCA 519
.||..| ||| |||||.||..||||.|||.|||||||..|.||..|.|||
BPUM_2536___l 471 TGGTGT-GGCAATGGAATCGTTGCAGATGGTCATTATCCTTCTATTTGCA 519
BSNT_04220___ 520 AAGCCGTTCAGTGACGCTTGGGAGCTTGTCAGCATGATCGGAATTCCGAT 569
|||||.||...|||.|||||||.||||||.||.||.||.|...|.|||||
BPUM_2536___l 520 AAGCCATTTGCTGATGCTTGGGGGCTTGTGAGTATTATTGCCTTGCCGAT 569
BSNT_04220___ 570 GATACTCATCAATGGAACAGGCAGTTTTATTTTTCTGTCTATTATTCAAG 619
|||..|..|.|||||||..|||||.|||||.|||.|.||.||..|.||..
BPUM_2536___l 570 GATTTTTGTGAATGGAATTGGCAGCTTTATCTTTTTATCAATCTTACAGT 619
BSNT_04220___ 620 CGATCATTC-GCAAGGAAGAACAGGCAAGAGCTCTCGAAACGCATCGAGT 668
|..|||||| |||| |||||.||.||||..||..|..|.||.||.||.||
BPUM_2536___l 620 CAGTCATTCGGCAA-GAAGAGCAAGCAAAGGCGATGCAGACACACCGCGT 668
BSNT_04220___ 669 GCTGACGATTGCTGATCAGACACTTCCATTTTTTCGCCAAGGATTAAATG 718
..|..|.||.||.|||||.||.|||||.||.||.||||||||.|||||||
BPUM_2536___l 669 ATTTTCAATCGCCGATCAAACGCTTCCTTTCTTCCGCCAAGGGTTAAATG 718
BSNT_04220___ 719 AAAACTCCTGTAAAAGTGTAGCGGCTATTATCCATAAGCTGACAGGAACA 768
||.|.||.|||||||||||.||||..||.||.|||....|.||||.||||
BPUM_2536___l 719 AACAGTCATGTAAAAGTGTGGCGGAGATCATTCATCGATTAACAGAAACA 768
BSNT_04220___ 769 GATGCGGTGTCTCTCACTGATAAAGAAAAGATCCTTGCGCATGTCGGTGC 818
||||||||.||..|.||.||||.|||||||||..|.||||||||.||||.
BPUM_2536___l 769 GATGCGGTCTCCTTAACCGATACAGAAAAGATTTTAGCGCATGTTGGTGA 818
BSNT_04220___ 819 GGGAATGGATCACCACATCCCATCGAAAAGTTTGATCACCGGCCTGTCCA 868
.||.|..|||||.||.||.|||||||||||..|.||.||.||.|||||.|
BPUM_2536___l 819 TGGGACAGATCATCATATTCCATCGAAAAGCCTCATTACAGGGCTGTCGA 868
BSNT_04220___ 869 AAAAGGTGATTAA--AACAGGGC-ATATTATGAAGGCGATTTCACAGGAA 915
||.|.|| |||.| |.| ||| |.|||||||||||...|||..|.||.
BPUM_2536___l 869 AACAAGT-ATTGATGAGC--GGCAAAATTATGAAGGCACATTCGAAAGAC 915
BSNT_04220___ 916 GAGATTGAATG------CACGCATGCTGAATGCCCTTTGCACGCTGCAAT 959
||.||..|.|| |.||||| |||||..|.||.||.||.||
BPUM_2536___l 916 GAAATCAATTGTTCAGTCCCGCAT------TGCCCGCTTCAAGCGGCGAT 959
BSNT_04220___ 960 TGTCCTGCCGCTGACATCGAACGG-CAATACAATCGGCACCTTAAAAATG 1008
|||.|||||.||.||.||.||.|| ||| ||.||.||.||.|||||||||
BPUM_2536___l 960 TGTGCTGCCCCTCACCTCCAATGGTCAA-ACGATTGGAACATTAAAAATG 1008
BSNT_04220___ 1009 TACTTTAAAAGC-CCGGCAGGCCTGAGTCA-GGTAGAGGAGGAACTTGCC 1056
|| |||.||..| ||||..||..|.|| || |||.||.|||||.|||||.
BPUM_2536___l 1009 TA-TTTCAATTCTCCGGTCGGATTAAG-CAGGGTGGAAGAGGAGCTTGCA 1056
BSNT_04220___ 1057 GAGGGGCTGGCCATGCTGTTTTCGACACAGCTTGAGCTTGGGGAAGCAGA 1106
|||||..||||.|||||.|||||.||||||||||||||||||||.||.||
BPUM_2536___l 1057 GAGGGTTTGGCGATGCTATTTTCTACACAGCTTGAGCTTGGGGAGGCGGA 1106
BSNT_04220___ 1107 GCTGCAAAGCAAACTTCTCAAGGATGCTGAAATTAAAGCGCTTCAAGCAC 1156
|...||||||...||.||.||.|||||.||.||.|||||.||||||||.|
BPUM_2536___l 1107 GACCCAAAGCCGTCTGCTAAAAGATGCAGAGATCAAAGCACTTCAAGCGC 1156
BSNT_04220___ 1157 AGGTGAATCCGCATTTTTTATTTAATGCGATCAACACGATTTCTGCGTTA 1206
|.|||||||||||.|||||||||||.||.||.||.||.||.||||..||.
BPUM_2536___l 1157 AAGTGAATCCGCACTTTTTATTTAACGCCATTAATACCATCTCTGTTTTG 1206
BSNT_04220___ 1207 TGCCGTACAGATGTTGAAAAAACCCGTAAGCTCCTATTGCAGCTCAGTGT 1256
||..|.||..||||.||.|...|..|.|||.|.||..|.|||||.|||.|
BPUM_2536___l 1207 TGTAGAACGAATGTAGAGATGGCTAGGAAGTTGCTGCTTCAGCTGAGTAT 1256
BSNT_04220___ 1257 TTATTTTCGTTCAAACCTTCAAGGAGCGAGACAGCTGCTGATCCCGCTCT 1306
|||||||||.||.||..|.|||||.||..|.||||||||.|||||.|| |
BPUM_2536___l 1257 TTATTTTCGATCCAATTTGCAAGGCGCCCGCCAGCTGCTCATCCCACT-T 1305
BSNT_04220___ 1307 CA-AAGGAGCTGAACCATCTTAACGCCTATTTGTCATTAGAACAGGCGCG 1355
|| ||.||..|..|.|||.|..|.||.|||||||||.|.|||||.||..|
BPUM_2536___l 1306 CATAAAGAAATACAGCATGTAGAAGCATATTTGTCACTTGAACAAGCAAG 1355
BSNT_04220___ 1356 TTTTCCCGGGAAATATAAAAT----TGAGCTT---AATATCGACAGCAGA 1398
.||||| ||||| ||.|| |||.||| ||| |..|.||.||
BPUM_2536___l 1356 GTTTCC----AAATA-AATATCACGTGACCTTTCAAAT-TGAAAAGGAG- 1398
BSNT_04220___ 1399 CTGGAGCAGAT--TGAAATCCCTCCGTTTGTTTTGCAGGTGCTTGTCGAG 1446
|||||||||.| || ||.||.||.|||||..|.|||||.|||||.||.
BPUM_2536___l 1399 CTGGAGCAGGTGATG--ATTCCGCCATTTGTGCTTCAGGTACTTGTTGAA 1446
BSNT_04220___ 1447 AACGCGCTTCGGCACGCGTTTCCGAAAAAACAA--GACATGTGCAAGGTT 1494
||.||..|..|.||.||.|||||.|||.|.||| ||..||||
BPUM_2536___l 1447 AATGCAGTGAGACATGCTTTTCCTAAACATCAAACGAGCTGTG------- 1489
BSNT_04220___ 1495 ACAGTCTGTGTCTTATC-----TGAT----GATG--CATCCGTCTATATG 1533
.|||| .||.|||| |||| |||| ||| |||.|||||
BPUM_2536___l 1490 -AAGTC---ATCGTATCCGCTGTGATGAAAGATGGACAT--GTCAATATG 1533
BSNT_04220___ 1534 AAGGTGGCGGATAACGGACGCGGAATTCCGCCG-----GACGTCTTGCCG 1578
||.|||.|||||||.||||..||||| || |||
BPUM_2536___l 1534 AAAGTGACGGATAATGGACAAGGAAT-----CGAGAATGAC--------- 1569
BSNT_04220___ 1579 GAA-CTGGGAAAG------AAA---CCGTTTCCGTCTAAGGAGGGAACCG 1618
|| .|||...|| ||| ||..||...||.||.||.|||||.|
BPUM_2536___l 1570 -AAGATGGCTCAGTTATTAAAAGCGCCTGTTGAATCAAAAGAAGGAACAG 1618
BSNT_04220___ 1619 GTACAGCGCTTTATAACCTAAATCAGCGGCTGATCGGTTTATTCGGACAG 1668
||||.||.||||.|||..||.||||||||.|.|..||..|.||.|| |||
BPUM_2536___l 1619 GTACGGCTCTTTTTAATTTAGATCAGCGGTTAAGAGGGATTTTTGG-CAG 1667
BSNT_04220___ 1669 -CAGGCTGCACTGCATATCAGCAGTGAGGTTCATA------AAGGGACAG 1711
||.||.||.| |||| || |||||| ||||.||.|
BPUM_2536___l 1668 ACAAGCAGCTC----TATC--CA------TTCATAGCAGCCAAGGCACTG 1705
BSNT_04220___ 1712 AGGTCTCCTTTCAAGTGCCAATGCAACAGATGAAAGAGGGAGAAGAACAT 1761
|..||||.||||...|.||||||.|..|..|.|||.||| ||
BPUM_2536___l 1706 ACATCTCATTTCGCATTCCAATGGACTATGTAAAAAAGG---------AT 1746
BSNT_04220___ 1762 GCTCAGGGTGTTAATAGTTGA 1782
|.| || |.|||||
BPUM_2536___l 1747 GAT-------TT--TCGTTGA 1758
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