Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03990 and BPUM_2389

See DNA alignment / Visit BSNT_03990 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:29
# Commandline: needle
#    -asequence pep-align/BSNT_03990___yrrC.1.24716.seq
#    -bsequence pep-align/BPUM_2389___recD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03990___yrrC-BPUM_2389___recD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03990___yrrC-BPUM_2389___recD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03990___yrrC
# 2: BPUM_2389___recD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 799
# Identity:     637/799 (79.7%)
# Similarity:   721/799 (90.2%)
# Gaps:           6/799 ( 0.8%)
# Score: 3356.0
# 
#
#=======================================

BSNT_03990___      1 MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKA     50
                     ||:||||:|||:||:|||||..||:||::|||:||||||.||||.:|:|.
BPUM_2389___r      1 MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKT     50

BSNT_03990___     51 VSVTGYFPALQEEETYTFYGKIVTHPKFGLQFQAEHFKKEIPTTKEGIIQ    100
                     .|||||||||.||||||||||:.:|||||.||||.||:||:||||:|||.
BPUM_2389___r     51 ASVTGYFPALHEEETYTFYGKVTSHPKFGEQFQATHFQKEVPTTKQGIIH    100

BSNT_03990___    101 YLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADT    150
                     |||||||||||||||||||.|||...::||:.|.:||||||||||||||.
BPUM_2389___r    101 YLSSDLFEGIGKKTAEEIVGKLGSETLHKIMRDPAVLYDVPRLSKKKADK    150

BSNT_03990___    151 LAGALQRHQGLEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQL    200
                     ||.|||.|||||||||||||:||||||||||||.||||||:||:||||||
BPUM_2389___r    151 LAAALQEHQGLEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQL    200

BSNT_03990___    201 VKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETTCLSEGHTYIE    250
                     |||||||||.||||||:|.|:||:.|||::||:|||:||..|.:|||||:
BPUM_2389___r    201 VKDVEGIGFIKADELGARTGISGSDPERIRAALLYTVETASLQDGHTYIQ    250

BSNT_03990___    251 TEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFP    300
                     |:.||::|:.||||:..| .::||||.|:.||||||.|:::|||.|||.|
BPUM_2389___r    251 TKDLIVETRKLLNQTGNE-YKVTEMDVADQIIALGEGKEMIIEDERCYHP    299

BSNT_03990___    301 SLFYAEQNVAKRVKHIASQTEYENQFPESEFLLALGELEERMNVQYAPSQ    350
                     |||||||:||||::.|.|||||.:|||||||||||||||||:.|||||:|
BPUM_2389___r    300 SLFYAEQSVAKRIQKIVSQTEYADQFPESEFLLALGELEERLGVQYAPTQ    349

BSNT_03990___    351 KEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD    400
                     ||||||||.||||||||||||||||||:||||||.:|||||||||.||||
BPUM_2389___r    350 KEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKD    399

BSNT_03990___    401 EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIE    450
                     |:||.|||||||||||||:||||||||||||||||||:|||:|.::||||
BPUM_2389___r    400 ESFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDDEQPIE    449

BSNT_03990___    451 GKLLIIDEASMLDIWLANHLFKAIPDHIQIIIVGDEDQLPSVGPGQVLRD    500
                     |||:||||:||||||||||||||||||||:|:||||.|||||||||||||
BPUM_2389___r    450 GKLVIIDESSMLDIWLANHLFKAIPDHIQVIMVGDEHQLPSVGPGQVLRD    499

BSNT_03990___    501 LLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFI    550
                     |||||.:|.|.||||||||:|||||||||.||||:||.::||.:||||||
BPUM_2389___r    500 LLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFI    549

BSNT_03990___    551 RCGGSQIKEVVEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQD    600
                     :|...|:|||:||||:||.:|||:|||||||||||:|||||||||.|||.
BPUM_2389___r    550 KCSADQMKEVIEKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQH    599

BSNT_03990___    601 ILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEITSIFYA    650
                     ||||.|.|.||:.|||||||||||:||||||||||:||||||||.|||||
BPUM_2389___r    600 ILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDIGEIVSIFYA    649

BSNT_03990___    651 KENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVL    700
                     |||||||||||:||||||:|||||||:|||||||||||||||||||||||
BPUM_2389___r    650 KENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVL    699

BSNT_03990___    701 PVVKGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTS    750
                     |||:.||||||||||||||||:||||||||||.|||||||||:.::||||
BPUM_2389___r    700 PVVRSYYRMLRRNLLYTAITRSKKFLILCGEESALEWGVKNNEDSLRQTS    749

BSNT_03990___    751 LKNRLSVQVEE-MDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ    798
                     |..|| ||.|| |||||.||||||||||||||||||||||||||.|   
BPUM_2389___r    750 LTMRL-VQTEEIMDAELAALQKELPFSVHDANIGMEGITPFDFMHE---    794


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_03990 and BPUM_2389

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
