Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03990 and BPUM_2389
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_03990___yrrC.1.24716.seq
# -bsequence dna-align/BPUM_2389___recD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03990___yrrC-BPUM_2389___recD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03990___yrrC-BPUM_2389___recD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03990___yrrC
# 2: BPUM_2389___recD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2452
# Identity: 1746/2452 (71.2%)
# Similarity: 1746/2452 (71.2%)
# Gaps: 122/2452 ( 5.0%)
# Score: 5910.0
#
#
#=======================================
BSNT_03990___ 1 GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAA 50
||||||.|.|||||.|||||..|.||.||.|||||.||.||.|.||||||
BPUM_2389___r 1 GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAA 50
BSNT_03990___ 51 AGGGACAG-TCAACACAGTCATCTATCATAATGACACCAATTTATATACG 99
.||||||| |||| .|.||.||.|..||||||||.|..||||||||..||
BPUM_2389___r 51 GGGGACAGTTCAA-GCCGTTATTTTCCATAATGAAAGTAATTTATACTCG 99
BSNT_03990___ 100 GTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATTGAAGATAAAGC 149
||..|.||.||||||||||..||.||.||.|||..|.|.||.||.|||.|
BPUM_2389___r 100 GTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAGAAAAC 149
BSNT_03990___ 150 CGTATCCGTGACGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACA 199
.|.|||.||.||.|||||||||||.||.|||||.||.||.||.||.||||
BPUM_2389___r 150 AGCATCTGTCACAGGCTACTTCCCAGCACTTCATGAGGAGGAAACTTACA 199
BSNT_03990___ 200 CGTTTTACGG-AAAGATCGTAACCCATCCAAAGTTCGGGCTCCAATTTCA 248
|.||.||.|| |||| ||...|.||||||.|||||.||....||.|||||
BPUM_2389___r 200 CCTTCTATGGCAAAG-TCACGAGCCATCCGAAGTTTGGTGAACAGTTTCA 248
BSNT_03990___ 249 GGCGGAGCATTTCAAAAAGGAGATTCCAACGACTAAGGAAGGCATCATTC 298
||||...|||||..|||||||..|.||.||.||.||..||||.||.||.|
BPUM_2389___r 249 GGCGACTCATTTTCAAAAGGAAGTACCGACAACAAAACAAGGAATAATCC 298
BSNT_03990___ 299 AATATTTATCGAGTGATTTATTCGAGGGGATCGGCAAAAAAACAGCTGAA 348
|.|||.|.||.|||||||||||.||||||||.||||||||.|||||.|||
BPUM_2389___r 299 ATTATCTTTCAAGTGATTTATTTGAGGGGATAGGCAAAAAGACAGCGGAA 348
BSNT_03990___ 349 GAAATTGTGAAAAAGCTGGGC---GACAGCGCCATTAATAAAATATTGGC 395
||||||||...||||||.||| ||.| ||| ||.||||||
BPUM_2389___r 349 GAAATTGTAGGAAAGCTTGGCAGTGAGA-CGC--TTCATAAAA------- 388
BSNT_03990___ 396 TGATGCTT----CAGTGCTT---TATGATGTTCCCAGACTCTCAAAAAAG 438
|.||||.| |||.|.|| |||||.|||||..|..|.|||||||||
BPUM_2389___r 389 TTATGCGTGACCCAGCGGTTTTGTATGACGTTCCGCGCTTATCAAAAAAG 438
BSNT_03990___ 439 AAAGCCGACACGCTGGCTG--GCGCATTGCAGCGGCATCAGGGACTGGAG 486
||.||.||.|.||||||.| |||| |.|||..||||||.|||.||||.
BPUM_2389___r 439 AAGGCTGATAAGCTGGCCGCAGCGC--TCCAGGAGCATCAAGGATTGGAA 486
BSNT_03990___ 487 CAAATCATGATTTCCTTGAATCAGTTTGGCTTTGGCCCGCAGCTGTCTAT 536
|||||||||||...|||||||||.|..||||||||.||||||||....||
BPUM_2389___r 487 CAAATCATGATCAGCTTGAATCAATACGGCTTTGGTCCGCAGCTCAGCAT 536
BSNT_03990___ 537 GAAAATCTATCAAGCCTATGAATCCGAGACGCTTGAAAAGATTCAGGAAA 586
|||.||.|||||||..||.|||...||||||||..|.||||||.|.||||
BPUM_2389___r 537 GAAGATTTATCAAGTGTACGAAAGTGAGACGCTGCAGAAGATTGAAGAAA 586
BSNT_03990___ 587 ATCCTTATCAGCTTGTGAAGGATGTAGAAGGCATCGGGTTTGGGAAAGCG 636
|.||.||||||||.||.||||||||.|||||.|||||.|||...||.||.
BPUM_2389___r 587 ACCCGTATCAGCTCGTCAAGGATGTTGAAGGGATCGGATTTATTAAGGCA 636
BSNT_03990___ 637 GATGAGCTGGGCAGC-AGAATGGGTCTTTCGGGTAACCATCCTGAGCGGG 685
|||||.||.||| || ||||..||..|.||.||.|...|.||.|||||
BPUM_2389___r 637 GATGAACTTGGC-GCTAGAACCGGCATCTCAGGAAGTGACCCAGAGCG-- 683
BSNT_03990___ 686 TAAA-------AGC--TGCTATTTTGTACACGCTTGAAACGACTTGTCTG 726
|| ||| ||| |||.|||| .|.||.||..|..||||
BPUM_2389___r 684 --AATCCGTGCAGCCTTGC---TTTATACA--GTGGAGACAGCCAGTCT- 725
BSNT_03990___ 727 TCA-GAGGGGCACACGTACATAGAAACGGAACAGCTGATCATCGACACTC 775
||| ||.||.||.|||||||||.||||..|..|..|||||.||||.||.|
BPUM_2389___r 726 TCAGGACGGTCATACGTACATACAAACAAAGGATTTGATCGTCGAAACCC 775
BSNT_03990___ 776 AATCACTGTTAAACCAGTCA-GCAAGGGAAGGGCAGCGCA---TCACAGA 821
.|..||||.|.||.||..|| ||||.| ||..|| |.||.||
BPUM_2389___r 776 GAAAACTGCTCAATCAAACAGGCAATG-------AGTACAAAGTGACGGA 818
BSNT_03990___ 822 AATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTG 871
||||||.|.|||..|...|||.|||||.|||||.|||...|||||.||..
BPUM_2389___r 819 AATGGACGTCGCCGATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGA 868
BSNT_03990___ 872 TCATAGAAGATGGCCGCTGTTATTTTCCTTCGCTGTTTTACGCAGAACAA 921
||||.|||||||..||.||.|||..|||.||..|.|||||.||.||.|||
BPUM_2389___r 869 TCATTGAAGATGAGCGGTGCTATCATCCGTCCTTATTTTATGCCGAGCAA 918
BSNT_03990___ 922 AACGTTGCAAAGCGTGTGAAACATATCG-CTAGCCAAACCGAATATG-AG 969
|..||.||.||.|||.|..||.|.|||| || .||||||.||||||| ||
BPUM_2389___r 919 AGTGTCGCGAAACGTATACAAAAAATCGTCT-CCCAAACGGAATATGCAG 967
BSNT_03990___ 970 AACCAGTTTCCCGAATCAGAGTTTTTGCTCGCGTTGGGAGAACTGGAAGA 1019
|.||.|||||.||||||||.||..|.||.||..|.||.||.||.||.||
BPUM_2389___r 968 -ATCAATTTCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTAGAGGA 1016
BSNT_03990___ 1020 ACGGATGAATGTTCAGTATGCCCCCAGCCAGAAGGAAGCGATTCAAAAAG 1069
||||.||...||.||.|||||.||.|..||.|||||||||||||||||.|
BPUM_2389___r 1017 ACGGCTGGGCGTCCAATATGCGCCGACACAAAAGGAAGCGATTCAAAAGG 1066
BSNT_03990___ 1070 CCCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGAAAA 1119
|.||....||.||.|||||.||||||||||||||.||.||.||.||.||.
BPUM_2389___r 1067 CACTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAG 1116
BSNT_03990___ 1120 ACGACGGTAATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGT 1169
||.||.||.||.|.|||||||||.|||||.|||.|.||.|||||.|||||
BPUM_2389___r 1117 ACAACAGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCATGGTGT 1166
BSNT_03990___ 1170 GTCACTAGATCC--GTCAGCTTATAAAAAGGATGAAGCTTTTCCGATTGT 1217
.|||||.||.|| || |.|||||||||.||||||.|.||.||..||||
BPUM_2389___r 1167 ATCACTGGACCCAAGT--GATTATAAAAAAGATGAATCCTTCCCATTTGT 1214
BSNT_03990___ 1218 TTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGGATGAGTGAATCAACGG 1267
..|.||.||.||.||.|||.|||||||.||||||||||..||||||||.|
BPUM_2389___r 1215 GCTTGCGGCACCAACTGGGCGAGCAGCTAAACGGATGACAGAATCAACAG 1264
BSNT_03990___ 1268 GACTCCCTGCAGTCACGATACACAGGCTGCTTGGCTGGAACGGTGCTGAA 1317
|.||.||.||.||.|||||.||..||||||||||.||||||||..|.||.
BPUM_2389___r 1265 GGCTTCCAGCTGTGACGATTCATCGGCTGCTTGGTTGGAACGGATCAGAG 1314
BSNT_03990___ 1318 GGCTTTACTCATACAGAGGATCAGCCGATCGAAGGGAAGCTGTTAATTAT 1367
||.|||.|||||...||.||.||||||||.|||||.|||||..|.||.||
BPUM_2389___r 1315 GGATTTTCTCATGATGATGAACAGCCGATTGAAGGAAAGCTTGTCATCAT 1364
BSNT_03990___ 1368 CGATGAAGCCAGTATGCTTGATATATGGCTGGCGAATCATTTGTTCAAGG 1417
.||||||.|.||||||||.|||||.|||||.||||||||||||||.||.|
BPUM_2389___r 1365 TGATGAATCAAGTATGCTAGATATTTGGCTTGCGAATCATTTGTTTAAAG 1414
BSNT_03990___ 1418 CGATCCCTGATCATATACAAATCATCATTGTCGGAGACGAAGACCAGCTG 1467
|.||.|||||.|||||||||.|.|||||.||.||.||.|||.|.||.||.
BPUM_2389___r 1415 CCATTCCTGACCATATACAAGTGATCATGGTGGGGGATGAACATCAACTT 1464
BSNT_03990___ 1468 CCTTCCGTCGGTCCGGGACAAGTGCTCAGAGACTTGCTGGCATCCCAGGT 1517
||.||.|||||.||.||.||||||.|.|||||||||||.|||||.||.|.
BPUM_2389___r 1465 CCGTCTGTCGGACCAGGCCAAGTGTTAAGAGACTTGCTTGCATCACAAGC 1514
BSNT_03990___ 1518 GATTCCGACTGTGAGACTGACAGACATCTATCGCCAGGCGGAGGGGTCAT 1567
..|.||..|.||.|..||.||.||.||.||.||.|||||.||.||.||
BPUM_2389___r 1515 CGTGCCAGCGGTTACCCTAACCGATATTTACCGGCAGGCAGACGGCTC-- 1562
BSNT_03990___ 1568 CA--ATCGTCGAGCTTGCCCACCAGATGAAAAATGGATTGCTGCCGAACA 1615
|| ||.||.||.|||||.||..|.|||||||||||..|.|||||.||..
BPUM_2389___r 1563 CAGCATTGTTGAACTTGCACATGATATGAAAAATGGTGTCCTGCCAAAGG 1612
BSNT_03990___ 1616 ATTTGACTGCCCCGACAAAGGACCGTTCCTTTATTC----GCTGCGGCGG 1661
||.|.||.||.|...|||||||.||.| ||||..|| ||| |.||.|
BPUM_2389___r 1613 ATATTACCGCACGTTCAAAGGATCGAT-CTTTCATCAAATGCT-CAGCAG 1660
BSNT_03990___ 1662 GTCGCAAATCAAAGAAGTAGTTGAGAAGGTTGTCGCCAATGCATTG--AA 1709
.| |||||.||||||||..|||||||.||.|||..|||||| || .|
BPUM_2389___r 1661 AT--CAAATGAAAGAAGTGATTGAGAAAGTCGTCAGCAATGC--TGCTCA 1706
BSNT_03990___ 1710 AAAAGGCTATACAGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAG 1759
||||||||||.||||.||.||.|||||.||.||.||.||.|||||||.||
BPUM_2389___r 1707 AAAAGGCTATTCAGCTAAAGATATTCAAGTGCTTGCGCCCATGTACAAAG 1756
BSNT_03990___ 1760 GAAAAGCCGGCATTAATGAATTGAATGTGATGCTGCAGGACATTTTAAAT 1809
|||||||.|||||||||||..|.|||...|||||||||.|||||||.|||
BPUM_2389___r 1757 GAAAAGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTGAAT 1806
BSNT_03990___ 1810 CCTCCTAAAGAAAAACGGAGAGAATTGAAGTTCGGGGATGTTGTCTACAG 1859
|||...|||..||||.|..|||||.|....||.||.|||||.||.|||.|
BPUM_2389___r 1807 CCTAAAAAACCAAAAGGCCGAGAAATTCCTTTTGGTGATGTGGTGTACCG 1856
BSNT_03990___ 1860 AACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGT 1909
.||.||.||||||.|..|.||||||||.||||||||.||.||||||.|.|
BPUM_2389___r 1857 GACTGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCAGAGAACAATATTT 1906
BSNT_03990___ 1910 TCAACGGAGATATTGGCGAAATCACGTCGATATTTTATGCAAAGGAAAAT 1959
|.|||||.||||||||||||||....||.||.||||||||.||.|||||.
BPUM_2389___r 1907 TTAACGGTGATATTGGCGAAATTGTCTCAATTTTTTATGCGAAAGAAAAC 1956
BSNT_03990___ 1960 ACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGACGGCAATGAAATGAC 2009
||||||||||||||.|||||.||..|.||.|||||.||.||||||||.||
BPUM_2389___r 1957 ACAGAAAAAGAAGATATGGCTGTGATCTCCTTTGATGGGAATGAAATCAC 2006
BSNT_03990___ 2010 ATTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTA 2059
.|||||.|||||.||||||.||||||||||.|||||.|||||.||.||||
BPUM_2389___r 2007 TTTTACTAAAAAGGATTTTCATCAATTTACACATGCCTATTGTTGCTCTA 2056
BSNT_03990___ 2060 TTCATAAATCGCAGGGAAGTGAATTTCCGATTGTGGTTTTGCCTGTTGTG 2109
|.||.|||||.||.||.||||||||.||.||.||.||..||||.||.|||
BPUM_2389___r 2057 TCCACAAATCACAAGGCAGTGAATTCCCCATCGTTGTACTGCCAGTCGTG 2106
BSNT_03990___ 2110 AAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTAC 2159
|.|.|.||.||.||||||||..|..||||..|.||.||.||.||.|||||
BPUM_2389___r 2107 AGAAGTTACTACAGAATGCTTCGGCGAAATTTGCTGTACACAGCCATTAC 2156
BSNT_03990___ 2160 AAGAGCGAAG----AAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTG 2205
| ||||| ||.|||.|.||..|.|||||.||.||....||.||.
BPUM_2389___r 2157 A----CGAAGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCACTC 2202
BSNT_03990___ 2206 GAGTGGGGCGTGAAAAATAATGATGCAACTGTCAGACAGACCTCCTTGAA 2255
|||||||||||||||||.|||||.|...|..|||||||.||.|||||
BPUM_2389___r 2203 GAGTGGGGCGTGAAAAACAATGAGGATTCCCTCAGACAAACGTCCTT--- 2249
BSNT_03990___ 2256 AAAC----AGGCT-GT-----CCGTACAGGTTGAGGAAATGGATGCCGAG 2295
||| .|||| || |||.|.||.|| ||||||||.|||
BPUM_2389___r 2250 -AACGATGCGGCTCGTGCAAACCGAAGAGATT------ATGGATGCGGAG 2292
BSNT_03990___ 2296 CTTGAAGCTTTGCAAAAAGAGCTCCCGTTCAGCGTACACGACGCCAACAT 2345
||||.|||..|.||||||||.||.|||||.|||||.||.||.||.||.||
BPUM_2389___r 2293 CTTGCAGCACTTCAAAAAGAACTGCCGTTTAGCGTGCATGATGCAAATAT 2342
BSNT_03990___ 2346 TGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCAAT 2395
.||.|||||.||.||.||.|||||.|||||||||.|.|||.||
BPUM_2389___r 2343 CGGTATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA------- 2385
BSNT_03990___ 2396 AA 2397
BPUM_2389___r 2385 -- 2385
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